Abstract.
We use two pore-forming proteins, alpha-hemolysin and aerolysin, to compare the polymer size-dependence of ionic current block by two types of ethyleneglycol polymers: 1) linear and 2) 3-arm star poly(ethylene glycol), both applied as a polydisperse mixture of average mass 1kDa under high salt conditions. The results demonstrate that monomer size sensitivity, as known for linear PEGs, is conserved for the star polymers with only subtle differences in the dependence of the residual conductance on monomer number. To explain this absence of a dominant effect of polymer architecture, we propose that PEG adsorbs to the inner pore wall in a collapsed, salted-out state, likely due to the effect of hydrophobic residues in the pore wall on the availability of water for hydration.
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References
J.M. Harris (Editor), Poly(Ethylene Glycol) Chemistry (Plenum Press, New York, 1992)
S. Zalipsky, J.M. Harris (Editors), Poly(ethyleneglycol), Chemistry and Biological Applications, ACS Symposium Series, Vol. 680 (ACS, Washington DC, 1997)
K. Knop, R. Hoogenboom, D. Fischer, U.S. Schubert, Angew. Chem. Int. Ed. 49, 6288 (2010)
J.J. Kasianowicz, A.K. Balijepalli, J. Ettedgui, J.H. Forstater, H. Wang, H. Zhang, J.W.F. Robertson, Biochim. Biophys. Acta - Biomembranes 1858, 593 (2016)
O.V. Krasilnikov, R.Z. Sabirov, V.I. Ternovsky, P.G. Merzliak, J.N. Muratkhodjaev, FEMS Microbiol. Immunol. 105, 93 (1992)
P.G. Merzlyak, L.N. Yuldasheva, C.G. Rodrigues, C.M.M. Carneiro, O.V. Krasilnikov, S.M. Bezrukov, Biophys. J. 77, 3023 (1999)
O.V. Krasilnikov, in Structure and Dynamics of Confined Polymers, edited by J.J. Kasianowicz, M.S.Z. Kellermayer, D.W. Deamer (Kluwer, Dorderecht, 2002)
S.M. Bezrukov, I. Vodyanoy, R.A. Brutyan, J.J. Kasianowicz, Macromolecules 29, 8517 (1996)
L. Movileanu, S. Cheley, H. Bayley, Biophys. J. 85, 897 (2003)
O.V. Krasilnikov, C. Rodrigues, S. Bezrukov, Phys. Rev. Lett. 97, 018301 (2006)
J.W.F. Robertson, C.G. Rodrigues, V.M. Stanford, K.A. Rubinson, O.V. Krasilnikov, J.J. Kasianowicz, Proc. Natl. Acad. Sci. U.S.A. 104, 8207 (2007)
C.G. Rodrigues, D.C. Machado, S.F. Chevtchenko, O.V. Krasilnikov, Biophys. J. 95, 5186 (2008)
G. Baaken, N. Ankri, A.-K. Schuler, J. Rühe, J.C. Behrends, ACS Nano 5, 8080 (2011)
T. Zheng, G. Baaken, M. Vellinger, J.C. Behrends, J. Rühe, Sens. Actuators B 205, 268 (2014)
J.M. del Rio Martinez, E. Zaitseva, S. Petersen, G. Baaken, J.C. Behrends, Small 11, 119 (2015)
F. Piguet, H. Ouldali, F. Discala, M.-F. Breton, J.C. Behrends, J. Pelta, A. Oukhaled, Sci. Rep. 6, 38675 (2016)
G. Baaken, I. Halimeh, L. Bacri, J. Pelta, A. Oukhaled, J.C. Behrends, ACS Nano 9, 6443 (2015)
J.E. Reiner, J.J. Kasianowicz, B.J. Nablo, J.W.F. Robertson, Proc. Natl. Acad. Sci. U.S.A. 107, 12080 (2010)
A. Balijepalli, J.W.F. Robertson, J.E. Reiner, J.J. Kasianowicz, R.W. Pastor, J. Am. Chem. Soc. 135, 7064 (2013)
C.D. Heyes, J. Groll, M. Möller, G.U. Nienhaus, Mol. BioSyst. 3, 419 (2007)
G. Lapienis, Prog. Polym. Sci. 34, 852 (2009)
T.A. Orofino, Polymer 2, 305 (1961)
Y. Gnanou, P. Lutz, P. Rempp, Macromol. Chem. Phys. 189, 2885 (1988)
K. Shimada, R. Nagahata, S.-I. Kawabata, S. Matsuyama, T. Saito, S. Kinugasa, J. Mass Spectrom. 38, 948 (2003)
A. Balijepalli, J. Ettedgui, A.T. Cornio, J.W.F. Robertson, K.P. Cheung, J.J. Kasianowicz, C. Vaz, ACS Nano 8, 1547 (2014)
F. Oesterhelt, M. Rief, H.E. Gaub, New J. Phys. 1, 6 (1999)
M.L. Alessi, A.I. Norman, S.E. Knowlton, D.L. Ho, S.C. Greer, Macromolecules 38, 9333 (2005)
A.I. Norman, Y. Fei, D.L. Ho, S.C. Greer, Macromolecules 40, 2559 (2007)
I. Cozmuta, J.T. O’Keeffe, D. Bose, V. Stolc, Mol. Simul. 31, 79 (2005)
A. Aksimentiev, K. Schulten, Biophys. J. 88, 3745 (2005)
J. Wong-ekkabut, M. Karttunen, J. Chem. Theory Comput. 8, 2905 (2012)
A. Johner, J.F. Joanny, J. Phys. II 1, 181 (1991)
M. Möddel, M. Bachmann, W. Janke, J. Phys. Chem. B 113, 3314 (2009)
A.N. Rissanou, S.H. Anastasiadis, I.A. Bitsanis, J. Polym. Sci. B: Polym. Phys. 47, 2462 (2009)
H.-H. Wei, Y.-C. Li, Phys. Rev. E 94, 603 (2016)
J.A. Plascak, P.H.L. Martins, M. Bachmann, Phys. Rev. E 95, 050501 (2017)
P. Aryal, M.S.P. Sansom, S.J. Tucker, J. Mol. Biol. 427, 121 (2015)
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This paper is dedicated to the memory of Loïc Auvray: creative scientist, inspiring scholar and genial host of unforgettable gatherings.
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Talarimoghari, M., Baaken, G., Hanselmann, R. et al. Size-dependent interaction of a 3-arm star poly(ethylene glycol) with two biological nanopores. Eur. Phys. J. E 41, 77 (2018). https://doi.org/10.1140/epje/i2018-11687-6
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DOI: https://doi.org/10.1140/epje/i2018-11687-6
Keywords
- Polymers: From Adsorption to Translocation - Topical Issue in Memoriam Loïc Auvray (1956-2016)