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Metal Ions Induced Structural Transformation of Guanine and Water Supramolecular Networks

  • CHEMICAL PHYSICS OF NANOMATERIALS
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Abstract

Molecular self-assembly of Guanine (G) plays a key role in understanding the formation of nucleic acids and how it can be exploited for constructing nanostructures. The transformation effects of metal ions on the Deoxyribonucleic acid (DNA) bases guanine metal-organic coordination motifs in water have been investigated by scanning tunneling microcopy (STM). The G molecules can form a series of hydrogen-bonded structure at the water- highly oriented pyrolytic graphite (HOPG) interface through adjusting the concentration of G in water. Moreover, metal calcium ions (Ca2+) and potassium ions (K+) bind with G molecules to form G4C\({\text{a}}_{1}^{{2 + }}\) and the G4\({\text{K}}_{2}^{ + }\) metal-organic networks after the introduction of the alkali-metal ions in cellular environment.

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REFERENCES

  1. H. Yan, S. H. Park, G. Finkelstein, et al., Science 301, 1882 (2003). https://www.science.org/doi/abs/ 10.1126/science.1089389

    Article  CAS  PubMed  Google Scholar 

  2. A. Ciesielski, S. Lena, S. Masiero, G. P. Spada, and P. Samori, Angew. Chem. Int. Ed. 122, 2007 (2010). https://onlinelibrary.wiley.com/doi/full/10.1002/ ange.200905827.

    Article  Google Scholar 

  3. Y. He, Y. Tian, Y. Chen, A. E. Ribbe, and C. Mao, Chem. Commun. 47, 165 (2007). https://pubsrsc.53yu.com/en/content/articlelanding/ 2007/cc/b611984k/unauth.

    Article  Google Scholar 

  4. K. Wang, M. You, Y. Chen, et al., Angew. Chem. Int. Ed. 50, 6098 (2011). https://onlinelibrary.wiley.com/doi/full/10.1002/anie.201008053.

    Article  CAS  Google Scholar 

  5. K. M. M. Carneiro, F. A. Aldaye, and H. F. Sleiman, J. Am. Chem. Soc. 132, 679 (2010). https://pubs.acs.org/doi/abs/10.1021/ja907735m.

    Article  CAS  PubMed  Google Scholar 

  6. S. N. Georgiades, N. H. Abd Karim, K. Suntharalingam, and R. Vilar, Angew. Chem. Int. Ed. 50, 6098 (2011). https://onlinelibrary.wiley.com/doi/full/10.1002/ anie.200906363.

    Article  Google Scholar 

  7. S. M. Douglas, H. Dietz, T. Liedl, et al., Nature 459, 414 (2009). https://wwwnature.53yu.com/articles/nature08016.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. N. Bilbao, I. Destoop, S. D. Feyter, and D. Gonzalez-Rodriguez, Angew. Chem. Int. Ed. 55, 659 (2016). https://onlinelibrary.wiley.com/doi/full/10.1002/anie. 201509233.

    Article  CAS  Google Scholar 

  9. I. Imaz, M. Rubio-Martinez, J. An, et al., Chem. Commun. 47, 7287 (2011).

    Article  CAS  Google Scholar 

  10. S. Balasubramanian and S. Neidle, Curr. Opin. Chem. Biol. 13, 345 (2009). https://www.sciencedirect.com/ science/article/abs/pii/S1367593109000696.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. O. Yamauchi, A. Odani, and M. Takani, J. Chem. Soc., Dalton Trans. 23, 3411 (2002). https://doi.org/10.1039/B202385G

    Article  Google Scholar 

  12. U. Schlickum, R. Decher, F. Klappenberger, G. Zoppellaro, S. Klyatskaya, M. Ruben, I. Silanes, A. Arnau, K. Kern, H. Brune, and J. V. Barth, Nano Lett. 7, 3813 (2007). https://doi.org/10.1021/nl072466m

    Article  CAS  PubMed  Google Scholar 

  13. M. Pivetta, G. E. Pacchioni, E. Fernandes, and H. Brune, J. Chem. Phys. 142, 101928 (2015) https://doi.org/10.1063/1.4909518

    Article  CAS  PubMed  Google Scholar 

  14. A. Langner, S. L.Tait, N. Lin, et al., Angew. Chem. Int. Ed. 124, 4403 (2012).https://doi.org/10.1002/ange.201108530

    Article  Google Scholar 

  15. L. Wang, H. Kong, C. Zhang, et al., ACS Nano 8, 11799 (2014). https://doi.org/10.1021/nn5054156

    Article  CAS  PubMed  Google Scholar 

  16. E. S. Andersen, M. D. Dong, M. M. Nielsen, J. Kjems, et al., ACS Nano 2, 1213 (2008). https://doi.org/10.1021/nn800215j

    Article  CAS  PubMed  Google Scholar 

  17. W. Xu, R. E. Kelly, H. Gersen, et al., Small 5, 1952 (2009). https://doi.org/10.1002/smll.200900315

    Article  CAS  PubMed  Google Scholar 

  18. L. I. Pelevina, A. V. Akleev, I. N. Kogarko, et al., Russ. J. Phys. Chem. B 15, 1046 (2021). https://linkspringer.53yu.com/article/10.1134/S1990793121060233.

  19. Y. Li, J. M. Artes, J. Qi, J. Hihath, et al., J. Phys. Chem. Lett. 7, 1888 (2016). https://doi.org/10.1021/acs.jpclett.6b00749

    Article  CAS  PubMed  Google Scholar 

  20. W. Xu, J. Wang, M. Yu, et al., J. Am. Chem. Soc. 132, 15927 (2010). https://doi.org/10.1021/ja1078909

    Article  CAS  PubMed  Google Scholar 

  21. K. F. Sergeichev, N. A. Lukina, L. M. Apasheva, E. N. Ovcharenko, and A. V. Lobanov, Russ. J. Phys. Chem. B 16, 84 (2022). https://linkspringer.53yu.com/ article/10.1134/S1990793122010134.

  22. C. Zhang, L. Wang, L. Xie, et al., ChemPhysChem 16, 2099 (2015). https://doi.org/10.1002/cphc.201500301

    Article  CAS  PubMed  Google Scholar 

  23. W. Li, J. Jin, X. Leng, et al., J. Phys. Chem. C 120, 12605 (2016). https://doi.org/10.1021/acs.jpcc.6b03434

    Article  CAS  Google Scholar 

  24. G. Kresse and J. Furthmüller, Comput. Mater. Sci. 6, 15 (1996). https://doi.org/10.1016/0927-0256(96)00008-0

    Article  CAS  Google Scholar 

  25. J. Xu and M. Saeys, Chem. Eng. Sci. 62, 5039 (2007). https://doi.org/10.1016/j.ces.2006.11.050

    Article  CAS  Google Scholar 

  26. M. G. Khrenova, L. V. Polyakov, and A. V. Nemukhin, Russ. J. Phys. Chem. B 16, 455 (2022). https://linkspringer.53yu.com/article/10.1134/S1990793122030174.

  27. I. V. Polyakov, B. L. Grigorenko, and A. V. Nemukhin, Russ. J. Phys. Chem. B 15, 103 (2021). https://linkspringer.53yu.com/article/10.1134/S1990793121010255.

  28. C. Zhang, L. Xie, Y. Q. Ding, Q. Sun, and W. Xu, ACS Nano 10, 3776 (2016). https://doi.org/10.1021/acsnano.6b00393

    Article  CAS  PubMed  Google Scholar 

  29. R. E. Kelly, A. Y. J. Lee, and L. N. Kantorovich, J. Phys. Chem. B 109, 11933 (2005). https://doi.org/10.1021/jp050962y

    Article  CAS  PubMed  Google Scholar 

  30. L. Xie, C. Zhang, Y. Ding, and W. Xu, Angew. Chem. Int. Ed. 129, 5159 (2017). https://doi.org/10.1002/ange.201702589

    Article  Google Scholar 

  31. H. Kong, C. Zhang, L. Xie, L. Wang, and W. Xu, Angew. Chem. Int. Ed. 55, 7157 (2016). https://doi.org/10.1002/anie.201602572

    Article  CAS  Google Scholar 

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Funding

The authors acknowledge the financial and technical support from National Natural Science Foundation of China (Grant no. 12064026).

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Authors and Affiliations

  1. Department of Science, Nanchang Institute of Technology, Nanchang, China

    S. Li, W. Li, S. Qiu & X. Chen

  2. Nanchang Key Laboratory of Photoelectric Conversion and Energy Storage Materials, Nanchang, China

    W. Li, S. Qiu & X. Chen

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Correspondence to W. Li.

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Li, S., Li, W., Qiu, S. et al. Metal Ions Induced Structural Transformation of Guanine and Water Supramolecular Networks. Russ. J. Phys. Chem. B 17, 778–782 (2023). https://doi.org/10.1134/S1990793123030260

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  • DOI: https://doi.org/10.1134/S1990793123030260

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