Abstract
Single nucleotide polymorphisms (SNPs) are now considered as the most perspective and convenient markers for studies of genetic basis of multifactorial diseases. Fast development of technologies for exact screening of a large volume of genetic information and construction of genomic maps of SNP-markers promote the development of innovative diagnostic systems on the basis of significant SNP for an estimation of individual genetic risk of development of various diseases. This review considers the basic aspects of genetics of diabetes mellitus type 1 and 2 and an opportunity to use SNP as markers for the estimation of individual genetic predisposition to this disease.
Similar content being viewed by others
References
Zimmet, P., Alberti, K.G., and Shaw, J., Nature, 2001, vol. 414, pp. 782–787.
Florez, J.C., Hirschhorn, J., Altschuler, D., Annu. Rev. Genomics Hum.Genet., 2003, vol. 4, pp. 257–291.
Concannon, P., Erlich, H.A., Julier, C., Morahan, G., Nerup, J., Pociot, F.F., Todd, J.A., Rich, S.S., and the Type 1 Diabetes Genetics Consortium., Diabetes, 2005, vol. 54, pp. 2995–3001.
Brookes, A.J., Gene, 1999, vol. 234, pp. 177–186.
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=search&term=SNP+genetics+diabetes
Luna, M.T.T., Arch. Med. Res., 2005, vol. 36, pp. 210–222.
Field, L.L., Diabetologia, 2002, vol. 45, pp. 21–35.
Redondo, M.J., Fain, P.R., and Eisenbarth, G.S., Rec.Prog. Horm. Res., 2001, vol. 56, pp. 69–89.
Stewart, C.A., Horton, R., Allcock, R., Ashurst, J., Atrazhev, A., et al., Genome Research, 2004, vol. 14, pp. 1176–1187.
Hirschhorn, J.N., Pediatr. Diabetes., 2003, vol. 4(2), pp. 87–100.
Jaakkola, E., Herzberg, I., Crane, A.M., Pointon, J.J., Laiho, K., Kauppi, M., Kaarela, K., Wordsworth, B.P., Tuomilehto, J., and Brown, M.A., Tissue Antigens, 2004, vol. 64, pp. 88–95
Redondo, M.J, Kawasaki, E, and Mulgrew, C.L., J. Clin. Endocrinol. Metab., 2000, vol. 85, pp. 3793–3797.
Nosikov, V.V., Seregin, Yu.A., Titovich, E.V., Savost’anov, K.V., Zil’berman, L.I., Chistyakov, D.A., Kuraeva, T.L., and Dedov, I.I., Sakharnyi Diabet, 2002, vol. 1, pp. 34–37.
Chistiakov, D.A., Seryogin, Y.A., Turakulov, R.I., Savost’anov, K.V., Titovich, E.V., Zilberman, L.I., Kuraeva, T.L., Dedov, I.I., and Nosikov, V.V., J. Autoimmun., 2005, vol. 24(3), pp. 243–250.
Achenbach, P., Bonifacio, E., and Ziegler, A.G., Curr. Diab. Rep., 2005, vol. 5(2), pp. 98–103.
Bennett, S.T., Wilson, A.J., Esposito, L., Bouzekri, N., Undlien, D.E., Cucca, F., Nistico, L., Buzzetti, R., Bosi, E., Pociot, F., Nerup, J., Cambon-Thomsen, A., Pugliese, A., Shield, J.P., McKinney, P.A., Bain, S.C., Polychronakos, C., and Todd, J.A., Nat. Genet., 1997, vol. 17(3), pp. 350–352.
Vella, A., Cooper, J.D., Lowe, C.E., Walker, N., Nutland, S., Widmer, B., Jones, R., Ring, S.M., McArdle, W., Pembrey, M.E., Strachan, D.P., Dunger, D.B., Twells, R.C., Clayton, D.G., and Todd, J.A., Am. J. Hum. Genet., 2005, vol. 76, pp. 773–779.
Ueda, H., Howson, J.M., Esposito, L., Heward, J., Snook, H., Chamberlain, G., Rainbow, D.B., Hunter, K.M., Smith, A.N., Di Genova, G., et al., Nature, 2003, vol. 423, pp. 506–511.
Hill, R.J., Zozulya, S., Lu, Y.L., Ward, K., Gishizky, M., and Jallal, B., Exp. Hematol., 2002, vol. 30, pp. 237–244.
Bottini, N., Musumeci, L., Alonso, A., Rahmouni, S., Nika, K., Rostamkhani, M., MacMurray, J., Meloni, G.F., Lucarelli, P., Pellecchia, M., Eisenbarth, G.S., Comings, D., and Mustelin, T., Nat. Genet., 2004, vol. 36, pp. 337–338.
Smyth, D., Cooper, J.D., Collins, J.E., Heward, J.M., Franklyn, J.A., Howson, J.M., Vella, A., Nutland, S., Rance, H.E., Maier, L., et al., Diabetes, 2004, vol. 53, pp. 3020–3023.
Ladner, M.B., Bottini, N., Valdes, A.M., and Noble, J.A., Hum. Immunol., 2005, vol. 66, pp. 60–64.
Kim, M.S., and Polychronakos, C., Horm. Res., 2005, vol. 64, pp. 180–188.
Guo, D., Li, M., Zhang, Y., Yang, P., Eckenrode, S., Hopkins, D., Zheng, W., Purohit, S., Podolsky, R.H., Muir, A., et al., Nat. Genet., 2004, vol. 36, pp. 837–841.
Bohren, K.M., Nadkarni, V., Song, J.H., Gabbay, K.H., and Owerbach, D., J. Biol. Chem., 2004, vol. 279, pp. 27233–27238.
Kristiansen, O.P. and Nolsøe, R.L., Human Molecular Genetics, 2003, vol. 12(10), pp. 1101–1110.
Bassuny, W.M., Ihara, K., Kimura, J., Ichikawa, S., Kuromaru, R., Miyako, K., Kusuhara, K., Sasaki, Y., Kohno, H., Matsuura, N., Nishima, S., and Hara, T., Diabetes, 2003, vol. 55, pp. 189–192.
Biason-Lauber, A., Boehm, B., Lang-Muritano, M., Gauthier, B.R., Brun, T., Wollheim, C.B., and Schoenle, E.J., Diabetologia, 2005, vol. 48(5), pp. 900–905.
Maier, L.M., Chapman, J., Howson, J.M., Clayton, D.G., Pask, R., Strachan, D.P., McArdle, W.L., Twells, R.C., and Todd, J.A., Am. J. Hum. Genet., 2005, vol. 76(3), pp. 517–521.
Savost’yanov, K.V., Shestakova, M.V., Yakunina, N.Yu., Vikulova, O.K., Voronko, O.E., Chugunova, L.A., Shamkhalova, M.Sh., Dedov, I.I. and Nosikov, V.V., Probl. Endokrinol., 2005, no. 3, pp. 18–22.
Shestakova, M.V., Vikulova, O.K., Gorashko, N.M., Voronko, O.E., Babunova, N.B., Nosikov, V.V., and Dedov, I.I., Diabetes Res. Clin. Pract., 2006, vol. 74, pp. 41–50.
Voronko, O.E., Yakunina, N.Yu., Strokov, I.A., Lavrova, I.N., and Nosikov, V.V., Mol. Biol., 2005, vol. 39(2), pp. 230–234.
Barroso, I., Diabetic Medicine, 2005, vol. 22, pp. 517–535.
Daimon, M., Ji, G., Saitoh, T., Oizumi, T., Tominaga, M., Nakamura, T., Ishii, K., Matsuura, T., Inageda, K., Matsumine, H., Kido, T., Htay, L., Kamatani, N., Muramatsu, M., and Kato, T., Biochem. Biophys. Res. Commun., 2003, vol. 302, pp. 751–758.
Barroso, I., Luan, J., Middelberg, R.P., Harding, A.H., Franks, P.W., Jakes, R.W., Clayton, D., Schafer, A.J., O’Rahilly, S., and Wareham, N.J., PLoS Biol., 2003, vol. 1(1), pp. E20.
Lynn, S., Evans, J.C., White, C., Frayling, T.M., Hattersley, A.T., Turnbull, D.M., Horikawa, Y., Cox, N.J., Bell, G.I., and Walker, M., Diabetes, 2002, vol. 51, pp. 247–250.
Cox, N.J., Curr. Diab. Rep., 2002, vol. 2, pp. 186–190.
Horikawa, Y. Oda, N., Cox, N.J., Li, X., Orho-Melander, M., et al., Nat. Genet., 2000, vol. 26(2), pp. 163–175.
Fullerton, S.M., Bartoszewicz, A., Ybazeta, G., Horikawa, Y., Bell, G.I., Kidd, K.K., Cox, N.J., Hudson, R.R., and Di Rienzo, A., Am. J. Hum. Genet., 2002, vol. 70, pp. 1096–1106.
Tsuchiya, T., Schwarz, P.E., Bosque-Plata, L.D., Geoffrey Hayes, M., Dina, C., Froguel, P., et al., Mol. Genet. Metab., 2006, vol. 89(1–2), pp. 174–184.
Grant, S.F., Thorleifsson, G., Reynisdottir, I., Benediktsson, R., Manolescu, A., et al., Nat. Genet., 2006, vol. 38(3), pp. 320–323.
Zhang, C., Qi, L., Hunter, D.J., Meigs, J.B., Manson, J.E., van Dam, R.M., and Hu, F.B., Diabetes, 2006, vol. 55(9), pp. 2645–2648.
Scott, L.J., Bonnycastle, L.L., Willer, C.J., Sprau, A.G., Jackson, A.U., Narisu, N., Duren, W.L., Chines, P.S., Stringham, H.M., Erdos, M.R., Valle, T.T., Tuomilehto, J., Bergman, R.N., Mohlike, K.L., Collins, F.S., and Boehnke, M., Diabetes, 2006, vol. 55(9), pp. 2649–2653.
Groves, C.J., Zeggini, E., Minton, J., Frayling, T.M., Weedon, M.N., Rayner, N.W., Rayner, N.W., Hitman, G.A., Walker, M., Wiltshire, S., Hattersley, A.T., and McCarthy, M.I., Diabetes, 2006, vol. 55(9), pp. 2640–2644.
Odom, D.T., Zizlsperger, N., Gordon, D.B., Bell, G.W., Rinaldi, N.J., Murray, H.L., Volkert, T.L., Scheiber, J., Rolfe, A., Gifford, D.K., Fraenkel, E., Bell, G.I., and Young, R.A., Science, 2004, vol. 303, pp. 1378–1381.
Silander, K., Mohlke, K.L., Scott, L.J., Peck, E., Holshtein, P., et al., Diabetes, 2004, vol. 53(4), pp. 1141–1149.
Love-Gregory, L.D., Wasson, J., Ma, J., Jin, C.H., Glaser, B., Suarez, B.K., and Permutt, M.A., Diabetes, 2004, vol. 53(4), pp. 1134–1140.
Gloyn, A.L., Weedon, M.N., Owen, K.R. Turner, M.J., Knight, B.A., Hitman, G., Walker, M., Levy, J.C., Sampson, M., Halford, S., McCarthy, M.I., Hattersley, A.T., and Frayling, T.M., Hum. Genet., 2003, vol. 52, pp. 568–572.
Kretowski, A., Gugala, K., Okruszko, A., Wawrusiewicz-Kurylonek, N., and Gorska, M., Rocz. Akad. Med. Bialymst., 2005, vol. 50, pp. 148–150.
Ma, X., Warram, J.H., Trischitta, V., and Doria, A., J. Clin. Endocrinol. Metab., 2002, vol. 87(9), pp. 4407–4410.
Crispim, D., Canani, L.H., Gross, J.L., Tschiedel, B., Souto, K.E., and Roisenberg, I., Am. Hum. Genet., 2006, vol. 70 (Part 4), pp. 88–95.
Brown, A.C., Olver, W.I., Donnelly, C.J, May, M.E., Naggert, J.K., Shaffer, D.J., and Roopenian, D.C., BMC Genet., 2005, vol. 6(1), p. 12.
Yaguchi, H., Togawa, K., Moritani, M., and Itakura, M., Genomics, 2005, vol. 85(5), pp. 591–599.
The Wellcome Trust Case Control Consortium, Nature, 2007, vol. 447, pp. 661–678.
Todd, J.A., Walker, N.M., Cooper, J.D., et al., Nature Genetics, 2007, vol. 39, pp. 857–864.
Zeggini, E., Weedon, M.N., Lingren, C.M., et al., Science, 2007, vol. 316(5829), pp. 1336–1341.
Scott, L.J., Mohlke, K.L., Bonnycastle, L.L., et al., Science, 2007, vol. 316(5829), pp.1341–1345.
Itoh, Y., Mizuki, N., Shimada, T., Azuma, F., Itakura, M., Kashiwase, K., Kikkawa, E., Kulski, J.K., Satake, M., and Inoko, H., Immunogenetics, 2005, vol. 57(10), pp. 717–729.
Imabayashi, K., Yamamoto, Y., Inagaki, S., Doi, Y., Yositome, K., Miyaishi, S., and Ishizu, H., Acta Med. Okayama, 2005, vol. 59(5), pp. 179–194.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © O.E. Voronko, N.V. Bodoev, A.I. Archakov, 2008, published in Biomeditsinskaya Khimiya.
Rights and permissions
About this article
Cite this article
Voronko, O.E., Bodoev, N.V. & Archakov, A.I. The use of SNP markers for estimation of individual genetic predisposition to diabetes mellitus type 1 and 2. Biochem. Moscow Suppl. Ser. B 2, 126–132 (2008). https://doi.org/10.1134/S1990750808020029
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1990750808020029