Abstract
Modification of the chromophore in bacteriorhodopsin (BR) from ET1001 and D96N strains of Halobacterium salinarum (halobium) was carried out. Purple membranes were decolored by means of light-dependent hydroxylaminolysis. The all-trans -isomers of retinal and its 3,4-didehydro-, 4-keto-, and phenyl analogs were reconstituted into apomembranes. Absorption maxima of the homonymic pigments in both strains were similar. The kinetics of the M-intermediates in the mode of a single turnover of the photocycle induced by a short light flash (532 nm, 15 ns) was compared. For the investigated bacteriorhodopsin analogs the efficiency of the M-intermediate formation did not exhibit any reliable dependence on the point mutation. Both for ET1001 and for D96N strains the M-relaxation of the 4-ketoBR was distinctly biphasic, with the slow phase comprising about 10–15% of the signal amplitude. Replacement of the ionone ring by phenyl caused a weak deceleration of the M relaxation (∼1.5-fold decrease in t 1/2). Independence of the photocycle deceleration of the point mutation and chromophore modification was shown for all BR analogs studied.
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Abbreviations
- BR:
-
bacteriorhodopsin
- PM:
-
purple membranes
- AM:
-
apomembranes
- t 1/2 :
-
half-time of the process
References
Khodonov, A.A., Eremin, S.V., Lockshin, J.L., Shvets, V.I., Demina, O.V., Khitrina, L.V., and Kaulen, A.D., Retinal Analogs and Their Role in Studies of Bacteriorhodopsin, Bioorg. Khim. (Rus.), 1996, vol. 22, no. 10–11, pp. 745–776 [Transl. vers., Russian Journal of Bioorganic Chemistry, 1996, vol. 22, no. 10, pp. 640–671].
Brown, L.S., Reconciling Crystallography and Mutagenesis: a Synthetic Approach to the Creation of a Comprehensive Model for Proton Pumping by Bacteriorhodopsin, Biochim. Biophys. Acta, 2000, vol. 1460, no. 1, pp. 49–59.
Brown, L.S., Proton Transport Mechanism of Bacteriorhodopsin as Revealed by Site-Specific Mutagenesis and Protein Sequence Variability, Biokhimiya (Moscow) (Rus.), 2001, vol. 66, no. 11, pp. 1546–1554.
Hackett, N.R., Stern, L.J., Chao, B.H., Kronis, K.A., and Khorana, H.G., Structure-Function Studies on Bacteriorhodopsin. V. Effects of Amino Acid Substitutions in the Putative Helix F, J. Biol. Chem., 1987, vol. 262, no. 19, pp. 9277–9284.
Mogi, T., Marti, T., and Khorana, H.G., Structure-Function Studies on Bacteriorhodopsin. IX. Substitutions of Tryptophan Residues Affect Protein-Retinal Interactions in Bacteriorhodopsin, J. Biol. Chem., 1989, vol. 264, no. 24, pp. 14197–14201.
Marti, T., Otto, H., Roesselet, S.J., Heyn, M.P., and Khorana, G.H., Consequences of Amino Acid Insertions and/or Deletions in Transmembrane Helix C of Bacteriorhodopsin, Proc. Natl. Acad. Sci. USA, 1992, vol. 89, no. 4, pp. 1219–1223.
Greenhalgh, D.A., Farrens, D.L., Subramaniam, S., and Khorana, H.G., Hydrophobic Amino Acids in the Retinal-Binding Pocket of Bacteriorhodopsin, J. Biol. Chem., 1993, vol. 268, no. 27, pp. 20305–20311.
Soppa, J., Otomo, J., Straub, J., Tittor, J., Meessen, S., and Oesterhelt, D., Bacteriorhodopsin Mutants of Halobacterium sp. GRB. II. Characterization of Mutants, J. Biol. Chem., 1989, vol. 264, no. 22, pp. 13049–13056.
Druzhko, A.B., Photoinduced Transformation of Wild-Type and D96N-mutant 4-keto-Bacteriorhodopsin Gelatin Films, Thin Solid Films, 1997, vol. 293, no. 1–2, pp. 281–284.
Kolodner, P., Lukashev, E.P., Ching, Yuan-chin, and Druzhko, A.B., Electric-Field and Photochemical Effects in D85N Mutant Bacteriorhodopsin Substituted with 4-keto-Retinal, Thin Solid Films, 1997, vol. 302, no. 1–2, pp. 231–234.
Weetall, H.H., Druzhko, A.B., Samuelson, L.A., de Lera, A.R., and Alvarez R., Optical and Electrical Properties of Bacteriorhodopsin Langmuir-Blodgett Films: II. D96N Mutant and Its 4-keto and 9-demethyl Retinal Analogs, Bioelectrochemistry & Bioenergetics, 1997, vol. 44, no. 1, pp. 37–43.
Druzhko, A.B., Robertson, B., Alvarez, R., de Lera, A.R., and Weetall, H.H., Phototransformation and Proton Pumping Activity of the 14-Fluoro Bacteriorhodopsin Derivatives, Biochim. Biophys. Acta, 1998, vol. 1371, no. 2, pp. 371–381.
Kollbach, G., Steinmüller, S., Berndsen, T., Buss, V., and Gärtner, W., The Chromophore Induces a Correct Folding of the Polypeptide Chain of Bacteriorhodopsin, Biochemistry, 1998, vol. 37, no. 22, pp. 8227–8232.
Weetal, H.H., Druzhko, A.B., de Lera, A.R., Alvarez, R., and Robertson, B., Measurement of Proton Release and Uptake by Analogs of Bacteriorhodopsin, Bioelectrochemistry, 2000, vol. 51, no. 1, pp. 27–33.
Druzhko, A.B., Shakhbazian, V.Y., Alvarez, R., de Lera, A.R., and Weetall, H.H., Photoinduced Transformation of 14-F-bacteriorhodopsin Gelatin Films Based on Both Wild Type and D96N Mutant, Biosystems, 2001, vol. 59, no. 1, pp. 53–60.
Druzhko, A.B., Pirutin, S.K., de Lera, A.R., Alvarez, R., and Weetall, H.H., Effect of Dehydration on Photoinduced Transformation in Gelatin Films Made with 14-Fluoro Bacteriorhodopsin Derivatives, Appl. Biochem. Biotechnol., 2005, vol. 120, no. 2, pp. 121–132.
Druzhko, A.B., Alvarez, R., and de Lera, A.R., Photochromic Polymer Films Based on a 14-F Bacteriorhodopsin Derivative, J. Biomater. Sci. Polym. Ed., 2008, vol.19, no. 12, pp. 1585–1595.
Subramaniam, S., Marti, T., Rosselet, S.J., Rothschild, K.J., and Khorana, H.G., The Reaction of Hydroxylamine with Bacteriorhodopsin Studied with Mutants that Have Altered Photocycles: Selective Reactivity of Different Photointermediates, Proc. Natl. Acad. Sci. USA, 1991, vol. 88, no. 6, pp. 2583–2587.
Danshina, S.V., Drachev, A.L., Drachev, L.A., Eremin, S.V., Kaulen, A.D., Khitrina, L.V., and Mitsner, B.I., C(13)-Substituted Bacteriorhodopsin Analogs, Arch. Biochem. Biophys. 1990, vol. 279, no. 2, pp. 225–231.
Mironova, E.V., Lukin, A.Yu., Shevyakov, S.V., Alexeeva, S.G., Shvets, V.I., Demina, O.V., Khodonov, A.A., and Khitrina, L.V., Synthesis and Properties of Bacteriorhodopsin Analogs Containing Electron-Density Labels in the Chromophore Moiety, Biokhimiya (Moscow) (Rus.), 2001, vol. 66, no. 11, pp. 1638–1648.
Drachev, A.L., Drachev, L.A., Evstigneeva, R.P., Kaulen, A.D., Lazarova, Z.R., Laikhter, A.L., Mitsner, B.I., Skulachev, V.P., Khitrina, L.V., and Chekulaeva, L.N., Electrogenic Stages of the Photocycle of Bacteriorhodopsin Analogs Containing Residues of Retinal Derivatives, Biol. Membr. (Rus.), 1984, vol. 1, no. 11. pp. 1125–1142 [Transl. version in Biological Membranes, Archives of Soviet Science, Life Sciences Section, 1985, vol. 1, no. 11, pp. 2050–2084].
Drachev, L.A., Zorina, V.V., Mitsner, B.I., Khitrina, L.V., Khodonov, A.A., and Chekulaeva, L.N., Photocycle and Electrogenesis of 13-cis- and all-trans-aromatic Analogs of Bacteriorhodopsin, Biokhimiya (Moscow) (Rus.), 1987, vol. 52, no. 9, pp. 1559–1569.
Khitrina, L.V. and Lazarova, Z.R., Investigation of the 13-cis- and all-trans-Isomers of 4-Ketobacteriorhodopsin Biokhimiya (Moscow) (Rus.), 1989, vol. 54, no. 1, pp. 136–139 [Transl. version in Biochemistry (Moscow), (Rus.), 1989, vol. 54, no. 1, pp. 109–111].
Drachev L.A., Drachev A.L., Chekulaeva L.N., Evstigneeva R.P., Kaulen A.D., Khitrina L.V., Khodonov A.A., Lazarova Z.R., and Mitsner B.I., An Investigation of the Electrochemical Cycle of Bacteriorhodopsin Analogs with the Modified Ring, Arch. Biochem. Biophys. 1989, vol. 270, no. 1, pp. 184–197.
Oesterhelt, D. and Christoffel, V., Reconstitution of a Proton Pump, Biochem. Soc. Trans., 1976, vol. 4, no. 4, pp. 556–559.
Bayley, H., Radhakrishnan, R., Huang, K.S., and Khorana, H.G. Light-Driven Proton Translocation by Bacteriorhodopsin Reconstituted with the Phenyl Analog of Retinal, J. Biol. Chem. 1981, vol. 256, no. 8, pp. 3797–3801.
Serebryany, V.A., Mitsner, B.I., Zakis, V.I., and Tsetlin, V.I., Bacreriorhodopsin Analogs Obtained from 4-Substituted Retinals, Bioorg. Khim. (Rus.), 1981, vol. 7, no. 11, pp. 1731–1733.
Skulachev, V.P., Drachev, L.A., Kaulen, A.D., Khitrina, L.V., Zorina, V.V., and Danshina, S.V., Proton Transport and Electrogenous Phases in the Bacteriorhodopsin Photocycle, Proc. Intern. Conf.: Retinal Proteins, Ovchinnikov, Yu.A., Ed., Utrecht, The Netherlands: VNU Science Press, 1987, pp. 531–552.
Khitrina, L.V., Drachev, L.A., Eremin, S.V., Kaulen, A.D., and Khodonov, A.A., M-Intermediate in the 13-cis-Cycle of Bacteriorhodopsin Analogs, Proc. Vth Intern. Conf.: Structures and Functions of Retinal Proteins (Dourdan), Rigaud, J.L., Ed., Montrouge, France: Collogue INSERM/John Libbey Eurotext Ltd, 1992, vol. 221, pp. 167–170.
Kaulen, A.D., Electrogenic Processes and Protein Conformational Changes Accompanying the Bacteriorhodopsin Photocycle, Biochim. Biophys. Acta 2000, vol. 1460, no. 1, pp. 204–219.
Kalaidzidis, I.V., Kaulen, A.D., Radionov, A.N., Khitrina, L.V., Photoelectrochemical Cycle of Bacteriorhodopsin, Biokhimiya (Moscow) (Rus.), 2001, vol. 66, no. 11, pp. 1511–1526.
Oesterhelt, D. and Stoeckenius, W., Rhodopsin-Like Protein from the Purple Membrane of Halobacterium halobium, Nature New Biol., 1971, vol. 233, no. 39, pp. 149–152.
Davydova, O. I., Mironova, E.V., Shevyakov, S.V., Khitrina, L.V., Demina O.V., Skladnev, D.A., Grebennikov, E.P., Adamov, G.E., Khodonov, A.A., and Shvets, V.I., Biosynthetic Obtaining of Bacteriorhodopsin Analogues, Uchenye Zapiski MIFCT (Rus.), 2003, no. 8, pp. 26–33.
Drachev, L.A., Kaulen, A.D., Khitrina, L.V., Eremin, S.V., Khodonov, A.A., Shvets, V.I., and Chekulaeva, L.N., M-Type Intermediate Formation during Photocycle of Bacteriorhodopsin 13-cis-Analogs, Biokhimiya (Moscow) (Rus.), 1993, vol. 58, no. 6, pp. 819–826 [Transl. version in Biochemistry (Moscow), 1993, vol. 58, no. 6, pp. 545–550].
Balashov, S.P., Imasheva, E.S., Govindjee, R., Sheves, M., and Ebrey, T.G., Evidence that Aspartate-85 Has a Higher pK(a) in all-trans than in 13-cis-Bacteriorhodopsin, Biophys. J., 1996. vol. 71, no. 4, pp. 1973–1984.
Khitrina, L.V. and Ksenofontov, A.L., Bacteriorhodopsin. Correspondence of the Photocycle and Electrogenesis with Sites of the Molecule, Biokhimiya (Moscow) (Rus.), 2004, vol. 69, no. 12, pp. 1725–1728.
Brown, L.S., Druzhko, A.B., Lukashev, E.P., and Chamorovsky, S.K., Investigation of the Photochemical Cycle of a Bacteriorhodopsin Analog Containing 4-keto-Retinal Residue, Biol. Membr. (Rus.), 1991, vol. 8, no. 5, pp 460–467.
Balashov, S.P. and Litvin, F.F., Photochemical Transformations of Bacteriorhodopsin, Biofizika (Rus.), 1981, vol. 26, no. 3, pp. 557–570.
Karneeva, N.V., Balashov, S.P., and Litvin, F.F., Determination of the Complex Structure of the Bacteriorhodopsin Absorption Spectrum, Dokl. Akad. Nauk SSSR (Rus.), 1982, vol. 263, no. 3, pp. 725–729.
Balashov, S.P. and Litvin, F.F., Fotokhimicheskie prevrashcheniya bakteriorodopsina (Photochemical Transformations of Bacteriorhodopsin), Moscow, Moscow State University Press, 1985.
Danshina, S.V., Drachev, A.L., Drachev, L.A., Kaulen, A.D., Mitsner, B.I., Khitrina, L.V., and Khodonov, A.A., 11,12-Didehydroretinal-containing all-trans- and 13-cis-Analogues of Bacteriorhodopsin, Bioorg. Khim. (Rus.), 1989, vol. 15, no. 3, pp. 307–312 [Transl. version in Russian Journal of Bioorganic Chemistry, 1989, vol. 15, no. 3, pp. 175–180].
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Original Russian Text © L.V. Khitrina, E.V. Mironova, A.A. Khodonov, 2009, published in Biologicheskie Membrany, 2009, Vol. 26, No. 3, pp. 194–200.
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Khitrina, L.V., Mironova, E.V. & Khodonov, A.A. Bacteriorhodopsins containing modified chromophores: A study on the wild type and D96N mutant of Halobacterium salinarum . Biochem. Moscow Suppl. Ser. A 3, 128–133 (2009). https://doi.org/10.1134/S1990747809020044
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DOI: https://doi.org/10.1134/S1990747809020044