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Search of tandem repeats with insertion and deletions in the A. thaliana genome

  • Biochemistry, Biophysics, and Molecular Biology
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Abstract

A new mathematical method was used for the first time to search for tandem repeats with insertions and deletions in the full-length sequence of the A. thaliana genome. The method is based on a new algorithm for multiple alignment of sequences of certain periods without using paired comparisons of sequences. We identified 13997 periodic sites 2 to 50 characters long, only approximately 30% of which were known earlier. The possible origin and use of the identified sites with tandem repeats are discussed.

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Authors and Affiliations

  1. Federal Research Center “Fundamentals of Biotechnology”, Russian Academy of Sciences, Moscow, Russia

    E. V. Korotkov, Yu. M. Suvorova & K. G. Skryabin

Authors
  1. E. V. Korotkov
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  2. Yu. M. Suvorova
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  3. K. G. Skryabin
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Corresponding author

Correspondence to E. V. Korotkov.

Additional information

Original Russian Text © E.V. Korotkov, Yu.M. Suvorova, K.G. Skryabin, 2017, published in Doklady Akademii Nauk, 2017, Vol. 477, No. 6, pp. 742–744.

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Korotkov, E.V., Suvorova, Y.M. & Skryabin, K.G. Search of tandem repeats with insertion and deletions in the A. thaliana genome. Dokl Biochem Biophys 477, 398–400 (2017). https://doi.org/10.1134/S160767291706014X

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  • DOI: https://doi.org/10.1134/S160767291706014X

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