Skip to main content
Log in

Ab initio conformation analysis of ouabain and ouabagenin molecules

  • Published:
Russian Journal of General Chemistry Aims and scope Submit manuscript

Abstract

Full conformation analysis of molecules of cardiotonic steroids ouabain and ouabagenin was performed. Full ab initio optimization of the geometric parameters of all the possible conformations of these molecules was made. The calculations were performed by the restricted Hartree Fock method in the 6–31G* basis set using GAMESS program. The effect of various factors on the steric and electronic structure of ouabain and ouabagenin was analyzed. The major factor affecting the geometric and electronic structure of ouabain and ouabagenin molecules is the conformation of ring A of the steroid core.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Jorgensen, P.L., Quart. Rev. Biophys., 1974, vol. 7, no. 2, p. 239.

    Article  CAS  Google Scholar 

  2. Yoda, A., Mol. Pharmacol., 1973, vol. 9, no. 1, p. 51.

    CAS  Google Scholar 

  3. Yoda, A., Ann. N. Y. Acad. Sci., 1974, vol. 272, p. 598.

    Article  Google Scholar 

  4. Yoda, A. and Yoda, S., Mol. Pharmacol., 1977, vol. 13, no. 2, p. 352.

    CAS  Google Scholar 

  5. Kawamura, A., Abrell, L.M., Maggiali, F., Berova, N., Nakanishi, K., Labutti, J., Magil, S., Haupert, J.T., Jr., and Hamlyn, J.M., Biochemistry, 2001, vol. 40, no. 19, p. 5835.

    Article  CAS  Google Scholar 

  6. Schoner, W., Eur. J. Biochem., 2002, vol. 269, no. 10, p. 2440.

    Article  CAS  Google Scholar 

  7. Crambert, G., Schaer, D., Roy, S., and Geering, K., Mol. Pharmacol., 2004, vol. 65, no. 2, p. 335.

    Article  CAS  Google Scholar 

  8. Messerschmidt, A., Cryst. Struct. Commun., 1980, vol. 9, no. 3, p. 1185.

    CAS  Google Scholar 

  9. Go, K. and Kartha, G., Cryst. Struct. Commun., 1981, vol. 10, no. 4, p. 1329.

    CAS  Google Scholar 

  10. Go, K. and Kartha, G., Acta Crystallogr., Sect. C: Cryst. Struct. Commun., 1983, vol. 39, no. 3, p. 376.

    Article  Google Scholar 

  11. McIntyre, D.D., Germann, M.W., and Vogel, H.J., Can. J. Chem., 1990, vol. 68, no. 8, p. 1263.

    Article  CAS  Google Scholar 

  12. Bohl, M. and Sussmilch, R., Eur. J. Med. Chem., 1986, vol. 21, no. 3, p. 193.

    CAS  Google Scholar 

  13. Hariharan, P.C. and Pople, J.A., Theor. Chim. Acta, 1973, vol. 28, no. 3, p. 213.

    Article  CAS  Google Scholar 

  14. Schmidt, M.W., Baldridge, K.K., Boatz, J.A., Elbert, S.T., Gordon, M.S., Jensen, J.H., Koseki, S., Matsunaga, N., Nguyen, K.A., Su, S.J., Windus, T.L., Dupuis, M., and Montgomery, J.A., J. Comput. Chem., 1993, vol. 14, no. 11, p. 1347.

    Article  CAS  Google Scholar 

  15. Rohrer, D.C., Duax, W.L., and Fullerton, D.S., Acta Crystallogr., Sect. B, 1976, vol. 32, no. 10, p. 2893.

    Article  Google Scholar 

  16. Kawamura, A., PhD Thesis, New York: Department of Chemistry, Columbia Univ., 1999.

  17. Krylov, B.V., Derbenev, A.V., Podzorova, S.A., Lyudyno, M.I., Kuz’min, A.V., and Izvarina, N.L., Ross. Fiziol. Zh., 1999, vol. 85, no. 2, p. 225.

    CAS  Google Scholar 

  18. Xie, Z., Cell Mol. Biol., 2001, vol. 47, no. 2, p. 383.

    CAS  Google Scholar 

  19. Xie, Z., and Askari, A., Eur. J. Biochem., 2002, vol. 269, no. 10, p. 2434.

    Article  CAS  Google Scholar 

  20. Xie, Z., Ann. N. Y. Acad. Sci., 2003, vol. 986, p. 497.

    Article  CAS  Google Scholar 

  21. Penniyainen, V.A. and Lopatina, E.V., Byull. Eksp. Biol. Med., 2005, vol. 139, no. 2, p. 157.

    Article  Google Scholar 

  22. Lopatina, E.V., Penniyainen, V.A., and Zaika, A.A., Byull. Eksp. Biol. Med., 2005, vol. 140, no. 8, p. 150.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to I. V. Rogachevskii.

Additional information

Original Russian Text © I.V. Rogachevskii, 2008, published in Zhurnal Obshchei Khimii, 2008, Vol. 78, No. 2, pp. 308–317.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Rogachevskii, I.V. Ab initio conformation analysis of ouabain and ouabagenin molecules. Russ J Gen Chem 78, 286–294 (2008). https://doi.org/10.1134/S1070363208020187

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1070363208020187

Keywords

Navigation