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Russian Journal of Marine Biology

, Volume 43, Issue 2, pp 118–126 | Cite as

Taxonomic status of Euphylliidae corals in Peninsular Malaysia based on morphological structures and phylogenetic analyses using mitochondrial COI gene

  • Khodzori Fikri Akmal
  • Saad Shahbudin
  • Nordin Noor Faizul Hadry
  • Ku Sulong Ku Abdullah ‘Ulwan
  • Mat Zain Khairul Amira
Taxonomy

Abstract

The morphological and molecular studies provide greater taxonomic resolution for the scleractinian coral identification. The Euphylliidae corals are among the scleractinian family for which their corallite and polyp morphologies have been examined for species identification. However, knowledge on the molecular study for coral identification in Malaysia is very limited. Therefore, this study aimed to examine the morphological structures and phylogenetic analyses for six Euphylliidae coral species using the mitochondrial gene of cytochrome oxidase subunit I (COI). The results showed that the Euphylliidae corals are present under both “complex” and “robust” coral clades as supported by many researchers. The result also revealed that the species phylogeny of Euphylliidae corals is in concordances with its morphological structures of corallites. It can be concluded the combination between morphological structures and phylogenetic analyses provide more accurate identification than relying on morphological study alone. Hence, it provides a future direction for the scleractinian research progress in species identification.

Keywords

Euphylliidae corals corallite morphology species phylogeny Marine Protected Areas Peninsular Malaysia 

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References

  1. 1.
    Arrigoni, R., Stefani, F., Pichon, M., et al., Molecular phylogeny of the robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective, Mol. Phylogenet. Evol., 2012, vol. 65, pp. 183–193.CrossRefPubMedGoogle Scholar
  2. 2.
    Benzoni, F., Stefani, F., Stolarski, J., et al., Debating phylogenetic relationships of the scleractinian Psammocora: molecular and morphological evidences, Contrib. Zool., 2007, vol. 76, pp. 35–54.Google Scholar
  3. 3.
    Chen, C.A., Wallace, C.C., and Wolstenholme, J., Analysis of the mitochondrial 12S rDNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals, Mol. Phylogenet. Evol., 2002, vol. 23, pp. 137–149.CrossRefPubMedGoogle Scholar
  4. 4.
    Chen, I.P., Tang, C.Y., Chiou, C.Y., et al., Comparative analysis of coding and noncoding DNA regions indicate that Acropora (Anthozoa: Scleractina) possesses a similar evolutionary tempo of nuclear vs. mitochondrial genomes as in plants, Mar. Biotechnol., 2009, vol. 11, pp. 141–152.CrossRefPubMedGoogle Scholar
  5. 5.
    Forsman, Z.H., Barshis, D.J., Hunter, C.L., et al., Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in Porites, BMC Evol. Biol., 2009, vol. 9, p. 45.CrossRefPubMedPubMedCentralGoogle Scholar
  6. 6.
    Fukami, H., Chen, C.A., Budd, A.F., et al., Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (order Scleractinia, class Anthozoa, phylum Cnidaria), PloS One, 2008, vol. 3, p. e3222.CrossRefPubMedPubMedCentralGoogle Scholar
  7. 7.
    Gittenberger, A., Reijnen, B.T., and Hoeksema, B.W., A molecularly based phylogeny reconstruction of mushroom corals (Scleractinia: Fungiidae) with taxonomic consequences and evolutionary implications for life history traits, Contrib. Zool., 2011, vol. 80, pp. 107–132.Google Scholar
  8. 8.
    Granados-Cifuentes, C., Bellantuono, A.J., Ridgway, T., et al., High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity, BMC Genomics, 2013, vol. 14, p. 228.CrossRefPubMedPubMedCentralGoogle Scholar
  9. 9.
    Hall, T.A., BioEdit: A user-friendly biological alignment editor and analysis program for Windows 95/98/NT, Nucl. Acids Symp. Ser., 1999, vol. 41, pp. 95–98.Google Scholar
  10. 10.
    Hebert, P.D.N., Stoeckle M.Y., Zemlak T.S., et al., Identification of birds through DNA barcodes, PLoS Biol., 2004, vol. 2, pp. 1657–1663.CrossRefGoogle Scholar
  11. 11.
    Hellberg, M.E., No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation, BMC Evol. Biol., 2006, vol. 6, p. 24.CrossRefPubMedPubMedCentralGoogle Scholar
  12. 12.
    Kitahara, M.V., Cairns, S.D., Stolarski, J., et al., A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data, PLoS One, 2010, vol. 5, p. e11490.CrossRefPubMedPubMedCentralGoogle Scholar
  13. 13.
    Lin, M.F., Luzon, K.S., Licuanan, W.Y., et al., Seventy- four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria; Anthozoa), Zool. Stud., 2011, vol. 50, pp. 513–524.Google Scholar
  14. 14.
    Nei, M. and Kumar, S., Molecular Evolution and Phylogenetics, New York: Oxford Univ. Press, 2000.Google Scholar
  15. 15.
    Nylander, J.A.A., MrModeltest 2.0. Uppsala: Evolutionary Biology Centre, Uppsala University, 2004.Google Scholar
  16. 16.
    Richmond, R.H. and Wolanski, E., Coral research: past efforts and future horizons, in Coral Reefs: An Ecosystem in Transition, Dubinsky, Z. and Stambler, N., Eds., New York: Springer-Verlag, 2011, pp. 3–10.CrossRefGoogle Scholar
  17. 17.
    Shearer, T.L., Van Oppen, M.J.H., Romano, S.L., et al., Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria), Mol. Ecol., 2002, vol. 11, pp. 2475–2487.CrossRefPubMedGoogle Scholar
  18. 18.
    Stefani, F., Benzoni, F., Pichon, M., et al., Genetic and morphometric evidence for unresolved species boundaries in the coral genus Psammocora (Cnidaria; Scleractinia), Hydrobiologia, 2008, vol. 596, pp. 153–172.CrossRefGoogle Scholar
  19. 19.
    Stolarski, J. and Roniewicz, E., Towards a new synthesis of evolutionary relationships and classification of Scleractinia, J. Paleontol., 2001, vol. 75, pp. 1090–1108.CrossRefGoogle Scholar
  20. 20.
    Stolarski, J., Kitahara, M.V., Miller, D.J., et al., The ancient evolutionary origins of scleractinia revealed by azooxanthellate corals, BMC Evol. Biol., 2011, vol. 11, p. 316.CrossRefPubMedPubMedCentralGoogle Scholar
  21. 21.
    Tamura, K., Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases, Mol. Biol. Evol., 1992, vol. 9, pp. 678–687.PubMedGoogle Scholar
  22. 22.
    Tamura, K., Stecher, G., Peterson, D., et al., MEGA6: Molecular evolutionary genetics analysis version 6.0, Mol. Biol. Evol., 2013, vol. 30, pp. 2725–2729.CrossRefPubMedPubMedCentralGoogle Scholar
  23. 23.
    van Woesik, R., Scleractinian taxonomy, in Japan International Cooperation Agency Textbook for Special Training Course of Conservation and Sustainable Management of Coral Reefs, 1995, no. 12, pp. 1–10.Google Scholar
  24. 24.
    Vaughan, T.W. and Wells, J.W., Revision of the suborders families, and genera of the scleractinia, Spec. Pap., Geol. Soc. Am., 1943, vol. 44, pp. 1–394.Google Scholar
  25. 25.
    Veron, J.E.N., Corals of the World, Vol. 1–3, Townsville: Australian Institute of Marine Science, 2000.Google Scholar
  26. 26.
    Zlatarski, V.N. and Stake, J.L., The scleractinian corals: a perspective, Geol. Belg., 2012, vol. 15, pp. 370–375.Google Scholar

Copyright information

© Pleiades Publishing, Ltd. 2017

Authors and Affiliations

  • Khodzori Fikri Akmal
    • 1
  • Saad Shahbudin
    • 2
  • Nordin Noor Faizul Hadry
    • 3
  • Ku Sulong Ku Abdullah ‘Ulwan
    • 1
  • Mat Zain Khairul Amira
    • 1
  1. 1.Department of Biotechnology, Kulliyyah of ScienceInternational Islamic University Malaysia, Jalan Sultan Ahmad Shah, Bandar Indera MahkotaKuantanMalaysia
  2. 2.Department of Marine Science, Kulliyyah of ScienceInternational Islamic University Malaysia, Jalan Sultan Ahmad Shah, Bandar Indera MahkotaKuantanMalaysia
  3. 3.Department of Engineering, Kulliyyah of EngineeringInternational Islamic University Malaysia, Jalan GombakKuala LumpurMalaysia

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