Advertisement

Journal of Analytical Chemistry

, Volume 71, Issue 12, pp 1188–1197 | Cite as

Applicability of the critical chromatography concept to proteomic problems. II. Effect of mobile phase on the separation of peptides and proteins taking into account the amino acid sequence

  • A. V. Gorshkov
  • M. L. Pridatchenko
  • T. Yu. Perlova
  • I. A. Tarasova
  • L. I. Levitsky
  • M. V. Gorshkov
  • V. V. EvreinovEmail author
Articles

Abstract

The effect of parameters of a binary mobile phase (chemical properties of components, gradient profile, flow rate, and pH) on the separation of peptides and proteins is theoretically investigated using a model of critical chromatography (model BioLCCC). It is demonstrated that the retention volume of peptides can be inverted by changing separation conditions.

Keywords

high performance liquid chromatography proteins and peptides critical chromatography of biopolymers 

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. 1.
    Tarasova, I.A., Gorshkov, A.V., Evreinov, V.V., Adams, A.K., Zubarev, R.A., and Gorshkov, M.V., Polymer Sci., Ser. A, 2008, vol. 50, no. 3, p. 309.CrossRefGoogle Scholar
  2. 2.
    Perlova, T.Y., Goloborodko, A.A., Margolin, Y., Pridatchenko, M.L., Tarasova, I.A., Gorshkov, A.V., Moskovets, E., Ivanov, A.R., and Gorshkov, M.V., Proteomics, 2010, vol. 10, no. 19, p. 3458.CrossRefGoogle Scholar
  3. 3.
    Pridatchenko, M.L., Perlova, T.Yu., Hamidabe, H.B., Goloborodko, A.A., Tarasova, I.A., Gorshkov, A.V., Evreinov, V.V., Tsybin, Y.O., and Gorshkov, M.V., Anal. Bioanal. Chem., 2012, vol. 402, no. 8, p. 2521.CrossRefGoogle Scholar
  4. 4.
    Tarasova, I.A., Goloborodko, A.A., Perlova, T.Yu., Pridatchenko, M.L., Gorshkov, A.V., Evreinov, V.V., Ivanov, A.R., and Gorshkov, M.V., Anal. Chem., 2015, vol. 87. no. 13, p. 6562.CrossRefGoogle Scholar
  5. 5.
    Gorshkov, A.V., Pridatchenko, M.L., Perlova, T.Yu., Tarasova, I.A., Gorshkov, M.V., and Evreinov, V.V., J. Anal. Chem., 2016, vol. 71, no. 1, p. 110.CrossRefGoogle Scholar
  6. 6.
    Gorshkov, A.V., Evreinov, V.V., Pridatchenko, M.L., Tarasova, I.A., Filatova, N.N., Rozdina, I.G., and Gorshkov, M.V. Polymer Sci., Ser. A, 2011, vol. 53, no. 12, p. 1227.CrossRefGoogle Scholar
  7. 7.
    Gorshkov A.V., Evreinov V.V., Tarasova I.A., and Gorshkov M.V., Polymer Sci., Ser. B, 2007, vol. 49, nos. 3−4, p. 93.CrossRefGoogle Scholar
  8. 8.
    Gorshkov, A.V., Tarasova, I.A., Evreinov, V.V., Savitski, M.M., Nielsen, M.L., Zubarev, R.A., and Gorshkov, M.V., Anal. Chem., 2006, vol. 78, no. 22, p. 7770.CrossRefGoogle Scholar
  9. 9.
    Palmblad, M., Ramstrom, M., Markides, K.E., Hakansson, P., and Bergquist, J., Anal. Chem., 2002, vol. 74, no. 22, p. 5826.CrossRefGoogle Scholar
  10. 10.
    Strittmatter, E.F., Ferguson, P.L., Tang, K., and Smith, R.D., J. Am. Soc. Mass Spectrom., 2003, vol. 14, no. 9, p. 980.CrossRefGoogle Scholar
  11. 11.
    Shi, Y., Xiang, R., Horvath, C., and Wilkins, J.A., J. Chromatogr. A, 2004, vol. 1053, nos. 1−2, p. 27.CrossRefGoogle Scholar
  12. 12.
    Entelis, S.G., Evreinov, V.V., and Gorshkov, A.V., Adv. Polymer Sci., 1986, vol. 76, p. 129.CrossRefGoogle Scholar
  13. 13.
    TheorChromo. http://theorchromo.ru. Cited October 3, 2015.Google Scholar
  14. 14.
    Pyteomics.biolccc 1.5.0 documentation. http:// pythonhosted.org/pyteomics.biolccc. Cited October 3, 2015.Google Scholar
  15. 15.
    Goloborodko, A.A., Levitsky, L.I., Ivanov, M.V., and Gorshkov, M.V., J. Am. Soc. Mass Spectrom., 2013, vol. 24, no. 2, p. 301.CrossRefGoogle Scholar
  16. 16.
    Tarasova, I.A., Guryca, V., Pridatchenko, M.L., and Gorshkov, A.V., Kieffer-Jaquinod Evreinov, V.V., Masselon, C.D., and Gorshkov, M.V., J. Chromatogr. B: Anal. Technol. Biomed. Life Sci., 2009, vol. 877, no. 4, p. 433.CrossRefGoogle Scholar
  17. 17.
    Guo, D., Mant, C.T., Taneja, A.K., Parker, J.M.R., and Hodges, R.S., J. Chromatogr. A, 1986, vol. 359, p. 499.CrossRefGoogle Scholar
  18. 18.
    Hearn, M.T.W., Aguilar, M.I., Mant, C.T., and Hodges, R.S., J. Chromatogr. A, 1988, vol. 438, p. 197.CrossRefGoogle Scholar
  19. 19.
    Mant, C.T., Lorne Burke, T.W.L., Zhou, N.E., Parker, J.M.R., and Hodges, R.S., J. Chromatogr. A, 1990, vol. 485, p. 365.CrossRefGoogle Scholar
  20. 20.
    Koyama, J., Nomura, J., Shiojima, Y., Ohtsu, Y., and Horii, I., J. Chromatogr. A, 1992, vol. 625, no. 2, p. 217.CrossRefGoogle Scholar
  21. 21.
    Snyder, L.R., Dolan, J.W., and Gant, J.R., J. Chromatogr. B: Biomed. Sci. Appl., 1979, vol. 165, p. 3.CrossRefGoogle Scholar
  22. 22.
    Klammer, A.A., Yi, X., Maccoss, M.J., and Noble, W.S., Anal. Chem., 2007, vol. 79, no. 16, p. 6111.CrossRefGoogle Scholar
  23. 23.
    Krokhin, O.V., Anal. Chem., 2006, vol. 78, no. 22, p. 7785.CrossRefGoogle Scholar
  24. 24.
    Gilar, M., Xie, H., and Jaworski, A., Anal. Chem., 2010, vol. 82, no. 1, p. 265.CrossRefGoogle Scholar
  25. 25.
    Sapirstein, H.D., Scanlon, M.G., and Bushuk, W., J. Chromatogr. A, 1989, vol. 469, p. 127.CrossRefGoogle Scholar
  26. 26.
    Petritis, K., Kangas, L.J., Ferguson, P.L., and Anderson, G.A., Paša-Tolić, L., Lipton, M.S., Auberry, K.J., Strittmatter, E.F., Shen, Y., Zhao, R., and Smith, R.D., Anal. Chem., 2003, vol. 75, no. 5, p. 1039.CrossRefGoogle Scholar
  27. 27.
    Azarova, I.N., Baram, G.I., and Gol’dberg, E.L., Russ. J. Bioorg. Chem., 2006, vol. 32, no. 1, p. 50.CrossRefGoogle Scholar
  28. 28.
    Baczek, T., Wiczling, P., Marszall, M., Heyden, Y.V., and Kaliszan, R.J., J. Proteome Res., 2005, vol. 4, no. 2, p. 555.CrossRefGoogle Scholar
  29. 29.
    Shinoda, K., Tomita, M., and Ishihama, Y., Bioinformatics, 2008, vol. 24, no. 14, p. 1590.CrossRefGoogle Scholar
  30. 30.
    Tarasova, I.A., Perlova, T.Yu., Pridatchenko, M.L., Goloborodko, A.A., Levitskii, L.I., Evreinov, V.V., Guryca, V., Masselon, C.D., Gorshkov, A.V., and Gorshkov, M.V., J. Anal. Chem., 2012, vol. 67, no. 13, p. 1014.CrossRefGoogle Scholar

Copyright information

© Pleiades Publishing, Ltd. 2016

Authors and Affiliations

  • A. V. Gorshkov
    • 1
  • M. L. Pridatchenko
    • 2
  • T. Yu. Perlova
    • 2
  • I. A. Tarasova
    • 2
  • L. I. Levitsky
    • 2
  • M. V. Gorshkov
    • 2
  • V. V. Evreinov
    • 1
    Email author
  1. 1.Semenov Institute of Chemical Physics, Russian Academy of SciencesMoscowRussia
  2. 2.Tal’rose Institute for Energy Problems of Chemical PhysicsMoscowRussia

Personalised recommendations