Skip to main content
Log in

FADS Gene Polymorphism and the History of the Formation of the Indigenous Populations of Siberia

  • HUMAN GENETICS
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

The polymorphism of the rs174570, rs74771917, and rs7115739 loci of the FADS gene in Siberian populations was studied. It was shown that the frequency of the rs174570-T variant marking haplotype A with a reduced level of fatty acid desaturase expression in the modern indigenous populations increases in the direction from the south to the north of Siberia. Similarly, an increase in the frequency of the TTT haplotype at the rs174570, rs74771917, and rs7115739 loci was observed in the northern direction. However, in ancient times, the populations of Eastern Siberia (its northeastern part, Baikal region, and Primorye) were characterized by an equally high frequency of the rs174570-T variant (over 80%). It was shown that the main influx of the rs174570-C allele (and the CCG haplotype) to northeast Siberia occurred relatively recently, over the past 300 years, as a result of mating contacts between indigenous populations and immigrant groups of predominantly eastern European origin. The gene flow intensity (for the rs174570-C allele) is estimated to be 1.5–4.4% per generation. The appearance of the rs174570-C variant in the population of the Baikal region has been registered since the Eneolithic epoch, which is apparently associated mainly with the advance of the Afanasievo culture tribes to the east of Siberia. Meanwhile, analysis of paleogenomic data showed that the TTT haplotype, with high frequency distributed in modern Eskimos and Amerindians, was present in the Upper Paleolithic population of the Amur region, and therefore its carriers apparently took part in the formation of the ancient Beringian population.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.
Fig. S1.
Fig. S2.

REFERENCES

  1. Ameur, A., Enroth, S., Johansson, A., et al., Genetic adaptation of fatty-acid metabolism: a human specific haplotype increasing the biosynthesis of long-chain omega-3 and omega-6 fatty acids, Am. J. Hum. Genet., 2012, vol. 90, pp. 809—820. https://doi.org/10.1016/j.ajhg.2012.03.014

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Fumagalli, M., Moltke, I., Grarup, N., et al., Greenlandic Inuit show genetic signatures of diet and climate adaptation, Science, 2015, vol. 349, pp. 1343—1347. https://doi.org/10.1126/science.aab2319

    Article  CAS  PubMed  ADS  Google Scholar 

  3. Kothapalli, K.S.D., Ye, K., Gadgil, M.S., et al., Positive selection on a regulatory insertion—deletion polymorphism in FADS2 influences apparent endogenous synthesis of arachidonic acid, Mol. Biol. Evol., 2016, vol. 33, pp. 1726–1739. https://doi.org/10.1093/molbev/msw049

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Amorim, C.E., Nunes, K., Meyer, D., et al., Genetic signature of natural selection in first Americans, Proc. Natl. Acad. Sci. U. S. A., 2017, vol. 114, pp. 2195—2199. https://doi.org/10.1073/pnas.1620541114

    Article  CAS  PubMed  ADS  Google Scholar 

  5. Harris, D.H., Ruczinski, I., Yanek, L.R., et al., Evolution of hominin polyunsaturated fatty acid metabolism: from Africa to the New World, Genome Biol. Evol., 2019, vol. 11, pp. 1417—1430. https://doi.org/10.1093/gbe/evz071

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Malyarchuk, B.A., Derenko, M.V., and Denisova, G.A., Adaptive changes in fatty acid desaturation genes in indigenous populations of Northeast Siberia, Russ. J. Genet., 2021, vol. 57, no. 12, pp. 1461—1466. https://doi.org/10.1134/S1022795421120103

    Article  CAS  Google Scholar 

  7. Mathieson, I., Limited evidence for selection at the FADS locus in native American populations, Mol. Biol. Evol., 2020, vol. 37, pp. 2029—2033. https://doi.org/10.1093/molbev/msaa064

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Mathieson, S. and Mathieson, I., FADS1 and the timing of human adaptation to agriculture, Mol. Biol. Evol., 2018, vol. 35, pp. 2957—2970. https://doi.org/10.1093/molbev/msy180

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Ye, K., Gao, F., Wang, D., et al., Dietary adaptation of FADS genes in Europe varied across time and geography, Nat. Ecol. Evol., 2017, vol. 1, p. 0167. https://doi.org/10.1038/s41559-017-0167

  10. Mathieson, I., Lazaridis, I., Rohland, N., et al., Genome-wide patterns of selection in 230 ancient Eurasians, Nature, 2015, vol. 528, pp. 499—503. https://doi.org/10.1038/nature16152

    Article  CAS  PubMed  PubMed Central  ADS  Google Scholar 

  11. Mathieson, I., Day, F.R., Barban, N., et al., Genome-wide analysis identifies genetic effects on reproductive success and ongoing natural selection at the FADS locus, Nat. Hum. Behav., 2023, vol. 7, pp. 790—801. https://doi.org/10.1038/s41562-023-01528-6

    Article  PubMed  Google Scholar 

  12. Voruganti, V.S., Higgins, P.B., Ebbesson, S.O., et al., Variants in CPT1A, FADS1, and FADS2 are associated with higher levels of estimated plasma and erythrocyte delta-5 desaturases in Alaskan Eskimos, Front. Genet., 2012, vol. 3, p. 86. https://doi.org/10.3389/fgene.2012.00086

    Article  PubMed  PubMed Central  Google Scholar 

  13. Hsieh, P., Hallmark, B., Watkins, J., et al., Exome sequencing provides evidence of polygenic adaptation to a fat-rich animal diet in indigenous Siberian populations, Mol. Biol. Evol., 2017, vol. 34, pp. 2913—2926. https://doi.org/10.1093/molbev/msx226

    Article  CAS  PubMed  Google Scholar 

  14. Malyarchuk, B.A. and Derenko, M.V., Polymorphism of polyunsaturated fatty acid metabolism genes (FADS1 and FADS2) in the indigenous population of Siberia, Vestn. Sev.-Vost. Nauchn. Tsentra Dal’nevost. Otd. Ross. Akad. Nauk, 2018, no. 3, pp. 106—111.

  15. Untergasser, A., Cutcutache, I., Koressaar, T., et al., Primer3—new capabilities and interfaces, Nucleic Acids Res., 2012, vol. 40, p. e115. https://doi.org/10.1093/nar/gks596

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Tamura, K., Peterson, D., Peterson, N., et al., MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 2011, vol. 28, pp. 2731—2739. https://doi.org/10.1093/molbev/msr121

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Excoffier, L. and Lischer, H.E.L., Arlequin Suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Resour., 2010, vol. 10, pp. 564—567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

    Article  PubMed  Google Scholar 

  18. Cardona, A., Pagani, L., Antao, T., et al., Genome-wide analysis of cold adaption in indigenous Siberian populations, PLoS One, 2014, vol. 9. https://doi.org/10.1371/journal.pone.0098076

  19. Zhivotovskii, L.A., Genetika prirodnykh populyatsii (Genetics of Natural Populations), Ioshkar-Ola: Vertikal, 2021.

  20. Zhou, S., Xie, P., Quoibion, A., et al., Genetic architecture and adaptations of Nunavik Inuit, Proc. Natl. Acad. Sci. U. S. A., 2019, vol. 116, pp. 16012—16017. https://doi.org/10.1073/pnas.181038811625

    Article  CAS  PubMed  PubMed Central  ADS  Google Scholar 

  21. Sikora, M., Pitulko, V., Sousa, V., et al., The population history of northeastern Siberia since the Pleistocene, Nature, 2019, vol. 570, pp. 182—188. https://doi.org/10.1038/s41586-019-1279-z

    Article  CAS  PubMed  ADS  Google Scholar 

  22. Narasimhan, V.M., Patterson, N., Moorjani, P., et al., The formation of human populations in South and Central Asia, Science, 2019, vol. 365. https://doi.org/10.1126/science.aat7487

  23. Narody Severo-Vostoka Sibiri (Peoples of the North-East of Siberia), Bat’yanova, E.P. and Turaev, V.A., Eds., Moscow: Nauka, 2010.

  24. Balanovskaya, E.V., Bogunov, Yu.V., Bogunova, A.A., et al., Demographic portrait of Koryaks from northern Kamchatka, Vestn. Mosk. Univ., Ser. 23: Anthropol., 2020, no. 4, pp. 111–122. https://doi.org/10.32521/2074-8132.2020.4.111-122

  25. Mao, X., Zhang, H., Qiao, S., et al., The deep population history of northern East Asia from the Late Pleistocene to the Holocene, Cell, 2021, vol. 184, pp. 3256—3266.е13. https://doi.org/10.1016/j.cell.2021.04.040

    Article  CAS  PubMed  Google Scholar 

  26. Li, Q., Dong, K., Xu, L., et al., The distribution of three candidate cold-resistant SNPs in six minorities in North China, BMC Genomics, 2018, vol. 19, p. 134. https://doi.org/10.1186/s12864-018-4524-1

Download references

Funding

This study was supported by the Russian Science Foundation, grant no. 22-24-00264, https://rscf.ru/project/22-24-00264/.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to B. A. Malyarchuk.

Ethics declarations

CONFLICT OF INTEREST

The authors of this work declare that they have no conflicts of interest.

ETHICS APPROVAL AND CONSENT TO PARTICIPATE

The authors declare that all procedures performed in the study involving human participants were in accordance with the ethical standards of the institutional and/or national research ethics committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards. Informed voluntary consent was obtained from each of the participants included in the study.

The study was approved by the Ethical Committee of the Institute of Biological Problems of the North, Far Eastern Branch, Russian Academy of Sciences (approval no. 001/011 dated January 21, 2011). All subjects were adults.

Additional information

Publisher’s Note.

Pleiades Publishing remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Malyarchuk, B.A., Derenko, M.V., Denisova, G.A. et al. FADS Gene Polymorphism and the History of the Formation of the Indigenous Populations of Siberia. Russ J Genet 60, 199–209 (2024). https://doi.org/10.1134/S1022795424020091

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795424020091

Keywords:

Navigation