Skip to main content
Log in

Analysis of Genome Variability of Escherichia coli When Exposed to Ionizing Radiation

  • GENERAL GENETICS
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

The study of changes in the genetic apparatus of biological systems due to the influence of physical factors contributes to understanding the mechanisms of adaptation. The article is devoted to the analysis of the genome of the modified Escherichia coli PL-6 variant obtained as a result of repeated and gradually increasing exposure to 60Co γ rays at the Researcher facility. The integrity of the genetic material of the studied bacterial cells was checked by electrophoresis in 1.7% agarose gel. For the analysis of genome modifications, primers were designed to amplify several loci characterized by homology in a variety of E. coli strains. On the basis of the indicators of the number and size of amplified products using each of the presented primer combinations in E. coli before and after gamma irradiation, a significant change in the genome was established.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.
Fig. 2.

REFERENCES

  1. Volkova, P.Yu., Adaptive responses of plants to low-dose ionizing radiation, Extended Abstract of Cand. Sci. Dissertation, Obninsk: Vserossiiskii Nauchno-Issledovatel’skii Institut Radiologii i Agroekologii, 2020.

  2. Margulis, M.A. and Margulis, I.M., On the mechanism of the biological effect of ionizing radiation, Russ. J. Phys. Chem. A, 2005, vol. 79, no. 6, pp. 998–1006.

    CAS  Google Scholar 

  3. Medvedev, A.P. and Aleshkevich, V.N., Physical and chemical factors, affecting microorganisms, Vet. Zh. Belarusi, 2017, no. 1(6), pp. 26–29.

  4. Kobyalko, V.O. and Pimenov, E.P., The effect of radiation on microorganisms and the sensitivity of different taxonomic groups to irradiation, Aktual. Vopr. S-kh. Radiobiol., 2019, pp. 119–130.

    Google Scholar 

  5. Shuryak, I., Review of microbial resistance to chronic ionizing radiation exposure under environmental conditions, J. Environ. Radioac., 2019, no. 196, pp. 50–63. https://doi.org/10.1016/j.jenvrad.2018.10.012

  6. Beblo-Vranesevic, K., Bohmeier, M., Perras, A.K., et al., Lack of correlation of desiccation and radiation tolerance in microorganisms from diverse extreme environments tested under anoxic conditions, FEMS Microbiol. Lett., 2018, no. 365(6). https://doi.org/10.1093/femsle/fny044

  7. Bolsunovsky, A.Ya., Dementyev, D.V., Frolova, T.S., et al., Effects of gamma-radiation on DNA damage in onion (Allium cepa L.) seedlings, Dokl. Biochem. Biophys., 2019, vol. 489, no. 1, pp. 362–366. https://doi.org/10.1134/S1607672919060024

    Article  CAS  PubMed  Google Scholar 

  8. Belli, M. and Tabocchini, M.A., Ionizing radiation-induced epigenetic modifications and their relevance to radiation protection, Int. J. Mol. Sci., 2020, vol. 21, no. 17, pp. 1–34. https://doi.org/10.3390/ijms21175993

  9. Gallyamova, M.Yu., Study of radioprotective properties of drugs based on E. coli metabolites and substances of natural origin, Vet. Vrach, 2021, no. 2, pp. 16–18. https://doi.org/10.33632/1998-698X.2021-2-16-19

  10. Bruckbauer, S.T., Cox, M.M., Sussman, M.R., et al., Ionizing radiation-induced proteomic oxidation in Escherichia coli, Mol. Cell. Proteomics, 2020, vol. 19, no. 8, pp. 1375–1395. https://doi.org/10.1074/mcp.ra120.002092

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Levien, E., Min, J., Kondev, J., et al., Non-genetic variability in microbial populations: survival strategy or nuisance?, Rep. Prog. Phys., 2021, vol. 84, no. 11, p. 116601. https://doi.org/10.1088/1361-6633/ac2c92

  12. Yu, D., Banting, G., and Neumann, N.F., A review of the taxonomy, genetics, and biology of the genus Escherichia and the type species Escherichia coli, Can. J. Microbiol., 2021, vol. 67, no. 8, pp. 553–571. https://doi.org/10.1139/cjm-2020-0508

  13. Burby, P.E. and Simmons, L.A., Regulation of cell division in bacteria by monitoring genome integrity and DNA replication status, J. Bacteriol., 2020, vol. 202, no. 2. https://doi.org/10.1128/JB.00408-19

  14. Cooper, T.F., Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli, PLoS Biol., 2007, vol. 5, no. 9. https://doi.org/10.1371/journal.pbio.0050225

  15. Andryukov, B.G., Somova, L.M., Matosova, E.V., et al., Phenotypic plasticity as a strategy of bacterial resistance and an object of advanced antimicrobial technologies (a review), Sovremen. Tehnol. Med., 2019, vol. 11, no. 2, pp. 164–182. https://doi.org/10.17691/stm2019.11.2.22

  16. Testov, B.V., The effect of radiation on the body, Aktual. Vopr. Sovrem. Nauki, 2012, vol. 21, no. 2. pp. 6–13.

    Google Scholar 

  17. Nikitin, A.I., Gaizatullin, R.R., Koniukhov, G.V., et al., Study of radioprotective properties of E. coli metabolites, Int. J. Pharm. Technol., 2016, vol. 8, no. 2, pp. 14 328–14 340.

    Google Scholar 

  18. Ishmukhametov, K.T., Nizamov, R.N., Saitov, V.R., et al., Development of radiation-induced microbial mutants for the prevention and treatment of radiation damage in animals, Uch. Zap. Kazan. Gos. Akad. Vet. Med. im. N.E. Baumana, 2020, vol. 241, no. 1, pp. 95–98. https://doi.org/10.31588/2413-4201-1883-241-1-95-99

    Article  Google Scholar 

  19. Matic, I., Mutation rate heterogeneity increases odds of survival in unpredictable environments, Mol. Cell, 2019, vol. 75, no. 3, pp. 421–425. https://doi.org/10.1016/j.molcel.2019.06.029

    Article  CAS  PubMed  Google Scholar 

  20. Pelevina, I.I., Aleshchenko, A.V., Antoshchina, M.M., et al., Some ways of forming a radiation-induced adaptive response, Radiats. Biol. Radioekol., 2017, vol. 57, no. 6, pp. 565–572. https://doi.org/10.7868/S0869803117060017

    Article  Google Scholar 

  21. Tarasova, E.Yu., Matrosova, L.E., Hammadov, N.I., et al., Analysis of the DNA-damaging effect of mycotoxins against the background of the use of preventive means, Vet. Vrach, 2021, no. 3, pp. 65–71. https://doi.org/10.33632/1998-698X.2021-3-65-71

  22. Gallyamova, M.Yu., Vagin, K.N., Nizamov, R.N., et al., Phenotypic variability of E. coli, induced by 60Co γ irradiation, Vet. Vrach, 2021, no. 3, pp. 19–23. https://doi.org/10.33632/1998-698X.2021-3-19-23

  23. Koba, V.V. and Zhavoronkova, M.K., Direct and indirect effects of ionizing radiation on biological objects, Sbornik trudov Mezhdunarodnoi nauchno-tekhnicheskoi konferentsii molodykh uchenykh Belgoroskogo gosudarstvennogo tekhnicheskogo universiteta im. V.G. Shukhova (Collection of Proceedings of the International Scientific and Technical Conference of Young Scientists of Belgorod State Technical University Named after V.G. Shukhov), Belgorod, 2015, pp. 228–232.

  24. Nizamov, R.N., Gallyamova, M.Yu., Savkin, I.V., et al., Directed changes of the E. coli and B. bifidum phenotypes using ionizing radiation, Molodezhnye razrabotki i innovatsii v reshenii prioritrtnykh zadach APK (The Developments and Innovations of Young Scientists in Solving Priority Problems of the Agro-Industrial Complex) (Proc. Int. Sci. Conf. of Students and Graduate Students Dedicated to the 90th Anniversary of the Kazan Zootechnical School), Kazan’, 2020, pp. 335–337.

  25. Safonova, V.Yu., Antioxidant properties of some radioprotective drugs, Izv. Orenburg. Gos. Agrar. Univ., 2014, no. 2, pp. 149–151.

Download references

Funding

The work was carried out within the framework of the Strategic Academic Leadership Program of Kazan Federal University (priority 2030).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to K. N. Vagin.

Ethics declarations

ETHICS APPROVAL AND CONSENT TO PARTICIPATE

This work does not contain any studies involving human and animal subjects.

CONFLICT OF INTEREST

The authors of this work declare that they have no conflicts of interest.

Additional information

Publisher’s Note.

Pleiades Publishing remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gallyamova, M.Y., Vagin, K.N., Vasilevsky, N.M. et al. Analysis of Genome Variability of Escherichia coli When Exposed to Ionizing Radiation. Russ J Genet 60, 49–55 (2024). https://doi.org/10.1134/S1022795424010058

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795424010058

Keywords:

Navigation