Abstract
The study of changes in the genetic apparatus of biological systems due to the influence of physical factors contributes to understanding the mechanisms of adaptation. The article is devoted to the analysis of the genome of the modified Escherichia coli PL-6 variant obtained as a result of repeated and gradually increasing exposure to 60Co γ rays at the Researcher facility. The integrity of the genetic material of the studied bacterial cells was checked by electrophoresis in 1.7% agarose gel. For the analysis of genome modifications, primers were designed to amplify several loci characterized by homology in a variety of E. coli strains. On the basis of the indicators of the number and size of amplified products using each of the presented primer combinations in E. coli before and after gamma irradiation, a significant change in the genome was established.
REFERENCES
Volkova, P.Yu., Adaptive responses of plants to low-dose ionizing radiation, Extended Abstract of Cand. Sci. Dissertation, Obninsk: Vserossiiskii Nauchno-Issledovatel’skii Institut Radiologii i Agroekologii, 2020.
Margulis, M.A. and Margulis, I.M., On the mechanism of the biological effect of ionizing radiation, Russ. J. Phys. Chem. A, 2005, vol. 79, no. 6, pp. 998–1006.
Medvedev, A.P. and Aleshkevich, V.N., Physical and chemical factors, affecting microorganisms, Vet. Zh. Belarusi, 2017, no. 1(6), pp. 26–29.
Kobyalko, V.O. and Pimenov, E.P., The effect of radiation on microorganisms and the sensitivity of different taxonomic groups to irradiation, Aktual. Vopr. S-kh. Radiobiol., 2019, pp. 119–130.
Shuryak, I., Review of microbial resistance to chronic ionizing radiation exposure under environmental conditions, J. Environ. Radioac., 2019, no. 196, pp. 50–63. https://doi.org/10.1016/j.jenvrad.2018.10.012
Beblo-Vranesevic, K., Bohmeier, M., Perras, A.K., et al., Lack of correlation of desiccation and radiation tolerance in microorganisms from diverse extreme environments tested under anoxic conditions, FEMS Microbiol. Lett., 2018, no. 365(6). https://doi.org/10.1093/femsle/fny044
Bolsunovsky, A.Ya., Dementyev, D.V., Frolova, T.S., et al., Effects of gamma-radiation on DNA damage in onion (Allium cepa L.) seedlings, Dokl. Biochem. Biophys., 2019, vol. 489, no. 1, pp. 362–366. https://doi.org/10.1134/S1607672919060024
Belli, M. and Tabocchini, M.A., Ionizing radiation-induced epigenetic modifications and their relevance to radiation protection, Int. J. Mol. Sci., 2020, vol. 21, no. 17, pp. 1–34. https://doi.org/10.3390/ijms21175993
Gallyamova, M.Yu., Study of radioprotective properties of drugs based on E. coli metabolites and substances of natural origin, Vet. Vrach, 2021, no. 2, pp. 16–18. https://doi.org/10.33632/1998-698X.2021-2-16-19
Bruckbauer, S.T., Cox, M.M., Sussman, M.R., et al., Ionizing radiation-induced proteomic oxidation in Escherichia coli, Mol. Cell. Proteomics, 2020, vol. 19, no. 8, pp. 1375–1395. https://doi.org/10.1074/mcp.ra120.002092
Levien, E., Min, J., Kondev, J., et al., Non-genetic variability in microbial populations: survival strategy or nuisance?, Rep. Prog. Phys., 2021, vol. 84, no. 11, p. 116601. https://doi.org/10.1088/1361-6633/ac2c92
Yu, D., Banting, G., and Neumann, N.F., A review of the taxonomy, genetics, and biology of the genus Escherichia and the type species Escherichia coli, Can. J. Microbiol., 2021, vol. 67, no. 8, pp. 553–571. https://doi.org/10.1139/cjm-2020-0508
Burby, P.E. and Simmons, L.A., Regulation of cell division in bacteria by monitoring genome integrity and DNA replication status, J. Bacteriol., 2020, vol. 202, no. 2. https://doi.org/10.1128/JB.00408-19
Cooper, T.F., Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli, PLoS Biol., 2007, vol. 5, no. 9. https://doi.org/10.1371/journal.pbio.0050225
Andryukov, B.G., Somova, L.M., Matosova, E.V., et al., Phenotypic plasticity as a strategy of bacterial resistance and an object of advanced antimicrobial technologies (a review), Sovremen. Tehnol. Med., 2019, vol. 11, no. 2, pp. 164–182. https://doi.org/10.17691/stm2019.11.2.22
Testov, B.V., The effect of radiation on the body, Aktual. Vopr. Sovrem. Nauki, 2012, vol. 21, no. 2. pp. 6–13.
Nikitin, A.I., Gaizatullin, R.R., Koniukhov, G.V., et al., Study of radioprotective properties of E. coli metabolites, Int. J. Pharm. Technol., 2016, vol. 8, no. 2, pp. 14 328–14 340.
Ishmukhametov, K.T., Nizamov, R.N., Saitov, V.R., et al., Development of radiation-induced microbial mutants for the prevention and treatment of radiation damage in animals, Uch. Zap. Kazan. Gos. Akad. Vet. Med. im. N.E. Baumana, 2020, vol. 241, no. 1, pp. 95–98. https://doi.org/10.31588/2413-4201-1883-241-1-95-99
Matic, I., Mutation rate heterogeneity increases odds of survival in unpredictable environments, Mol. Cell, 2019, vol. 75, no. 3, pp. 421–425. https://doi.org/10.1016/j.molcel.2019.06.029
Pelevina, I.I., Aleshchenko, A.V., Antoshchina, M.M., et al., Some ways of forming a radiation-induced adaptive response, Radiats. Biol. Radioekol., 2017, vol. 57, no. 6, pp. 565–572. https://doi.org/10.7868/S0869803117060017
Tarasova, E.Yu., Matrosova, L.E., Hammadov, N.I., et al., Analysis of the DNA-damaging effect of mycotoxins against the background of the use of preventive means, Vet. Vrach, 2021, no. 3, pp. 65–71. https://doi.org/10.33632/1998-698X.2021-3-65-71
Gallyamova, M.Yu., Vagin, K.N., Nizamov, R.N., et al., Phenotypic variability of E. coli, induced by 60Co γ irradiation, Vet. Vrach, 2021, no. 3, pp. 19–23. https://doi.org/10.33632/1998-698X.2021-3-19-23
Koba, V.V. and Zhavoronkova, M.K., Direct and indirect effects of ionizing radiation on biological objects, Sbornik trudov Mezhdunarodnoi nauchno-tekhnicheskoi konferentsii molodykh uchenykh Belgoroskogo gosudarstvennogo tekhnicheskogo universiteta im. V.G. Shukhova (Collection of Proceedings of the International Scientific and Technical Conference of Young Scientists of Belgorod State Technical University Named after V.G. Shukhov), Belgorod, 2015, pp. 228–232.
Nizamov, R.N., Gallyamova, M.Yu., Savkin, I.V., et al., Directed changes of the E. coli and B. bifidum phenotypes using ionizing radiation, Molodezhnye razrabotki i innovatsii v reshenii prioritrtnykh zadach APK (The Developments and Innovations of Young Scientists in Solving Priority Problems of the Agro-Industrial Complex) (Proc. Int. Sci. Conf. of Students and Graduate Students Dedicated to the 90th Anniversary of the Kazan Zootechnical School), Kazan’, 2020, pp. 335–337.
Safonova, V.Yu., Antioxidant properties of some radioprotective drugs, Izv. Orenburg. Gos. Agrar. Univ., 2014, no. 2, pp. 149–151.
Funding
The work was carried out within the framework of the Strategic Academic Leadership Program of Kazan Federal University (priority 2030).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
ETHICS APPROVAL AND CONSENT TO PARTICIPATE
This work does not contain any studies involving human and animal subjects.
CONFLICT OF INTEREST
The authors of this work declare that they have no conflicts of interest.
Additional information
Publisher’s Note.
Pleiades Publishing remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Gallyamova, M.Y., Vagin, K.N., Vasilevsky, N.M. et al. Analysis of Genome Variability of Escherichia coli When Exposed to Ionizing Radiation. Russ J Genet 60, 49–55 (2024). https://doi.org/10.1134/S1022795424010058
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1022795424010058