Abstract
Swan goose breed Daozhou (Anser cygnoides Linnaeus, 1758 breed Daozhou, DZ) is one of the famous native breed of Hunan Province in China. The complete mitochondrial genome sequence plays an important role in the accurate determination of phylogenetic relationships among metazoans. It is the first time that the complete mitochondrial genome sequence of the DZ was reported, which was determined through PCR-based method. The total length of the mitogenome is 16 741 bp. It contains the typical structure, including 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and 1 non-coding control region (D-loop region) as that of most other vertebrates. The overall composition of the mitogenome was estimated to be 30.19% for A, 22.66% for T, 32.06% for C and 15.08% for G, in the order C > A > T > G feature occurs in the DZ. Phylogenetic analyses using N-J computational algorithms showed that the analyzed 22 Anseriform species are divided into four major clades: Anatinae, Anserinae, Dendrocygninae and Anseranatidae. In addition, our work confirmed that Swan goose breed Wugangtong grey (WGTG) and DZ have a close genetic relationship with fellow tribal members Swan goose breed Wugangtong white (WGTW), Lingxian white (LXW) and Xupu (XP). In addition, Swan goose breed WGTW, XP and LXW have highly similar genetic relationship. This work will provides an important data set for the study in genetic mechanism of goose in Hunan Province.
Similar content being viewed by others
REFERENCES
Qu, X.Y., Peng, Y.D., He, J., Zuo, M., and Cao, C.J., Comparative study on growth curve and production performance between the F1 generation of Daozhou grey goose × Lande goose and Lande goose, China Poult., 2016, vol. 38, no. 19, pp. 9—14.
Lowe, T.M. and Eddy, S.R., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Res., 1997, vol. 25, no. 5, pp. 955—964.
Wyman, S.K., Jansen, R.K., and Boore, J.L., Automatic annotation of organellar genomes with DOGMA, Bioinformatics, 2004, vol. 20, no. 17, pp. 3252—3255.
Anderson, S., Bankier, A.T., Barrell, B.G., et al., Sequence and organization of the human mitochondrial genome, Nature, 1981, vol. 290, no. 5806, pp. 457—464.
Lin, Q., Cao, R., Jiang, G.T., et al., The complete mitochondrial genome of the Xupu goose, Mitochondrial DNA, 2016, vol. 27, no. 2, pp. 1010—1011.
Lin, Q., Jiang, G.T., Cao, R., et al., Determination and analysis of the complete mitochondrial genome sequence of Wugangtong grey goose, Mitochondrial DNA, 2016, vol. 27, no. 2, pp. 1008—1009.
Zhang, H.H., Ren, Y., Chen, L., and Sha, W.L., The complete mitochondrial genome of scimitar-horned oryx (Oryx dammah), Mitochondrial DNA, 2012, vol. 23, no. 5, pp. 361—362.
Wang, C.H., Chen, Q., Lu, G.Q., et al., Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae, Gene, 2008, vol. 424, nos. 1—2, pp. 96—101.
Dai, Q.Z., Lin, Q., and Jiang, G.T., Phylogenetic studies of four Anser cygnoides (Anserini: Anserinae) in Hunan province of China based on complete mitochondrial DNA sequences, Mitochondrial DNA, 2016, vol. 27, no. 4, pp. 2464—2465.
Thompson, J.D., Gibson, T.J., and Plewniak, F., The Clustal-X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 1997, vol. 25, no. 24, pp. 4876—4882.
Tamura, K., Dudley, J., Nei, M., and Kumar, S., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Mol. Biol. Evol., 2007, vol. 24, no. 8, pp. 1596—1599.
Liu, G., Zhou, L.Z., Zhang, L.L., et al., The complete mitochondrial genome of bean goose (Anser fabalis) and implications for Anseriformes taxonomy, PLoS One, 2013, vol. 8, no. 5. e63334
Author information
Authors and Affiliations
Corresponding authors
Additional information
The article is published in the original.
Rights and permissions
About this article
Cite this article
Qian Lin, Jiang, GT. & Dai, QZ. The Complete Mitochondrial Genome of the Anser cygnoides Linnaeus, 1758 Breed Daozhou and Its Phylogenetic Analyses. Russ J Genet 54, 1493–1497 (2018). https://doi.org/10.1134/S1022795418120086
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1022795418120086