Abstract
The genetic variability of ten microsatellite loci was examined in samples of the herring from the Sea of Okhotsk and the Bering Sea. All loci were polymorphic; the expected heterozygosity estimates varied in the range of 0.3–94.3% (mean 66.7%). The degree of genetic differentiation of the herring was statistically significant (θ = 1.38%). The level of pairwise genetic differentiation FST was–0.002–0.046; RST was–0.003–0.166. Genetic differentiation of the herring from the Sea of Okhotsk and the Bering Sea correlated with the spatial-geographic structure of the species in the studied range on the basis of FST (P = 0.001).
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Ayushin, B.V., Some data on feeding herring in the northern part of the Sea of Okhotsk, Izv. Tikhook. Inst. Rybn. Khoz. Okeanogr., 1951, vol. 35, pp. 81–86.
Piskunov, I.A., Materials on the herring biology in the Gizhiga Bay, Izv. Tikhook. Inst. Rybn. Khoz. Okeanogr., 1954, vol. 39, pp. 59–72.
Naumenko, N.I., Biologiya i promysel morskikh sel’dei Dal’nego Vostoka (Biology and Harvest of Sea Fishery of the Far East), Petropavlovsk-Kamchatskii: Kamchatskii pechatnyi dvor, 2001.
Beacham, T.D., Schweigert, J.F., MacConnachie, C., et al., Population structure of herring (Clupea pallasi) in British Columbia determined by microsatellites, with comparisons to southeast Alaska and California, Dep. Fish. Ocean, Sci. Adv. Sec., Res. Doc., 2002/109. http://www.pac.dfo-mpo.gc.ca/sci/psarc/ResDocs/ pelagics_02 htm_e.htm.
Grant, W.S., Liu, M., and Yanagimoto, T., Limits of Bayesian skyline plot analysis of mtDNA sequences to infer historical demographies in Pacific herring (and other species), Mol. Phylog. Evol., 2012, vol. 65, pp. 203–212. doi 10.1016/j.ympev.2012.06.006
Liu, J.X., Tatarenkov, A., Beacham, T.D., et al., Effects of Pleistocene climatic fluctuations on the phylogeographic and demographic histories of Pacific herring (Clupea pallasii), Mol. Ecol., 2011, vol. 20, pp. 3879–3893. doi 10.1111/j.1365-294X.2011.05213.x
Liu, M., Lin, L., Gao, T., et al., What maintains the central North Pacific genetic discontinuity in Pacific herring?, PLoS One, 2012, vol. 7, no. 12. doi 10.1371/journal.pone.0050340
Small, M.P., Loxterman, J.L., Frye, A.E., et al., Temporal and spatial genetic structure among some Pacific herring (Clupea pallasi) populations in Puget Sound and the southern Strait of Georgia, Trans. Am. Fish. Soc., 2005, vol. 134, pp. 1329–1341. doi 10.1577/T05-050.1
Sugaya, T., Sato, M., Yokoyama, E., et al., Population genetic structure and variability of Pacific herring Clupea pallasii in the stocking area along the Pacific coast of northern Japan, Fish. Sci., 2008, vol. 74, pp. 579–588. doi 10.1111/j.1444-2906.2008.01561.x
Gorbachev, V.V., Chernoivanova, L.A., Panfilova, P.N., et al., Phylogeography of Pacific herring Clupea pallasii from Eurasian seas, Russ. J. Genet., 2012, vol. 49, no. 9, pp. 933–938. doi 10.1134/S1022795412080042
Smirnov, A.A., Marchenko, S.L., and Kashchenko, E.V., Assessment of the population status of herring in the Taui Bay and the Sea of Okhotsk by the results of morphometric analysis in 2001—2002, Sokhranenie bioraznoobraziya Kamchatki i prilegayushchikh morei (Biodiversity Conservation of Kamchatka and Adjacent Seas) (Proc. 6th Sci. Conf.), Petropavlovsk-Kamchatskii: Kamchatpress, 2005, pp. 253–255.
Rybnikova, I.G., Population genetic structure of herring of the Sea of Okhotsk, in Sel’devye severnoi chasti Tikhogo okeana (Herring (Clupeidae) of the Northern Part of the Pacific Ocean), Vladivostok: TINRO, 1985, pp. 57–62.
Kartavtsev, Y.F. and Rybnikova, I.G., Genetic and morphobiological study of Pacific herring (Clupea pallasi) populations from the seas of Japan and Okhotsk, Russ. J. Genet., 1999, vol. 35, no. 8, pp. 937–946.
Lapinskii, A.G., Smirnov, A.A., Gorbachev, V.V., and Solovenchuk, L.L., Genetic differentiation of Pacific herring Clupea pallasii Valenciennes, 1847 (Clupeidae, Clupeiformes) grouping, in the northern Sea of Okhotsk on the basis of RAPD data, Vopr. Rybolov., 2008, vol. 9, no. 1 (33), pp. 128–137.
Gorbachev, V.V., Solovenchuk, L.L., and Chernoivanova, L.A., Intraspecies structure of the pacific herring Clupea pallasii valenciennes, 1847 (Clupeidae: Clupeiformes) in the Sea of Japan and the southern Sea of Okhotsk inferred from the variability of mitochondrial DNA control, Russ. J. Mar. Biol., 2011, vol. 37, no. 6, pp. 489–493.
Hauser, L. and Ward, R.D., Population identification in pelagic fish: the limits of molecular markers, in Advances in Molecular Ecology, Carvalho, G.R., Ed., Amsterdam: IOS Press, 1998, pp. 191–224.
Buonaccorsi, V.P., McDowell, J.R., and Graves, J.E., Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans), Mol. Ecol., 2001, vol. 10, pp. 1179–1196. doi 10.1046/j.1365-294X.2001.01270.x
Ruzzante, D.E., Mariani, S., Bekkevold, D., et al., Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring, Proc. R. Soc. London, Ser. B, 2006, vol. 273, pp. 1459–1464. doi 10.1098/rspb.2005.3463
McPherson, A.A., O’Reilly, P.T., and Taggart, C.T., Genetic differentiation, temporal stability, and the absence of isolation by distance among Atlantic herring populations, Trans. Am. Fish. Soc., 2004, vol. 133, pp. 434–446. doi 10.1577/02-106
Larsson, L.C., Laikre, L., Andre, C., et al., Temporally stable genetic structure of heavily exploited Atlantic herring (Clupea harengus) in Swedish waters, Heredity, 2010, vol. 104, pp. 40–51. doi 10.1038/hdy.2009.98
Wildes, S.L., Vollenweider, J.J., Nguyen, H.T., and Guyon, J.R., Genetic variation between outer-coastal and fjord populations of Pacific herring (Clupea pallasii) in the eastern Gulf of Alaska, Fish. Bull., 2011, vol. 109, pp. 382–393.
Semenova, A.V., Stroganov, A.N., Smirnov, A.A., et al., Genetic variations in Clupea pallasii herring from Sea of Okhotsk based on microsatellite markers, Russ. J. Genet., 2014, vol. 50, no. 2, pp. 175–179. doi 10.1134/S1022795413120107
Semenova, A.V., Andreeva, A.P., Karpov, A.K., et al., Analysis of microsatellite loci variations in herring (Clupea pallasii marisalbi) from the White Sea, Russ. J. Genet., vol. 49, no. 6, pp. 652–666. doi 10.1134/S1022795413060100
Van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., and Shipley, P., MICROCHECKER: software for identifying and correcting genotyping errors in microsatellite data, Mol. Ecol. Notes, 2004, vol. 4, pp. 535–538. doi 10.1111/j.1471-8286.2004.00684.x
Chapuis, M.P. and Estoup, A., Microsatellite null alleles and estimation of population differentiation, Mol. Biol. Evol., 2007, vol. 24, pp. 621–631. doi 10.1093/molbev/msl191
Antao, T., Lopes, A., Lopes, R.J., et al., LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method, BMC Bioinf., 2008, vol. 9, p. 323. doi 10.1186/1471-2105-9-323
Weir, B.S. and Cockerham, C.C., Estimating F-statistics for the analysis of population structure, Evolution, 1984, vol. 38, pp. 1358–1370.
Slatkin, M., A measure of population subdivision based on microsatellite allele frequencies, Genetics, 1995, vol. 139, pp. 457–462.
Hardy, O.J., Charbonnel, N., Freville, H., and Heuertz, M., Microsatellite allele sizes: a simple test to assess their significance on genetic differentiation, Genetics, 2003, vol. 163, pp. 1467–1482.
Hardy, O.J. and Vekemans, X., SPAGEDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels, Mol. Ecol. Notes, 2002, vol. 2, pp. 618–620. doi 10.1046/j.1471-8286.2002.00305.x
Rice, W.R., Analyzing tables of statistical tests, Evolution, 1989, vol. 43, pp. 223–225.
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Original Russian Text © A.V. Semenova, A.N. Stroganov, K.I. Afanasiev, G.A. Rubtsova, K.A. Zhukova, A.A. Smirnov, 2018, published in Genetika, 2018, Vol. 54, No. 3, pp. 349–360.
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Semenova, A.V., Stroganov, A.N., Afanasiev, K.I. et al. Microsatellite Variability of Pacific Herring Clupea pallasii Valenciennes, 1847 from the Sea of Okhotsk and Bering Sea. Russ J Genet 54, 335–345 (2018). https://doi.org/10.1134/S1022795418030110
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DOI: https://doi.org/10.1134/S1022795418030110