Skip to main content
Log in

Evaluation of molecular genetic diversity of wild apple Malus sieversii populations from Zailiysky Alatau by microsatellite markers

  • Plant Genetics
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

The territory of Kazakhstan is part of the distribution range of Malus sieversii, which is one of the ancestors of cultivated apple tree varieties. The collected samples of Sievers apple leaves from five populations growing in the Zailiysky Alatau region served as a source not only for the creation of a bank of genomic DNA but also for determination of the wild apple genetic polymorphism. The seven microsatellite markers used in this study revealed 86 alleles with different frequencies, as well as the characteristic pools of rare alleles for each of the populations. Molecular genetic analysis showed a high level of genetic diversity (H o = 0.704, PIC = 0.752, I = 1.617). Moreover, interpopulation variability accounted only for 7.5% of total variability, confirming the genetic closeness of the populations examined. Based on phylogenetic analysis, it was demonstrated that the Bel’bulak and Almaty Reserve populations were closest to each other, while the most distant were the Ketmen and Great Almaty gorge populations, which suggests the dependence of genetic distance on the geographical.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Vavilov, N.I., The role of Central Asia in the origin of cultivated plants, in Proiskhozhdenie i geografiya kul’turnykh rastenii (Origin and Geography of Cultivated Plants), Leningrad: Nauka, 1987, pp. 132–134.

    Google Scholar 

  2. Flora Kazakhstana (Flora of Kazakhstan), Alma-Ata, 1961, vol. 4.

  3. Forte, A.V., Ignatov, A.N., Ponomarenko, V.V., et al., Phylogeny of the Malus (apple tree) species, inferred from its morphological traits and molecular DNA analysis, Russ. J. Genet., 2002, vol. 38, no. 10, pp. 1150–1160.

    Article  CAS  Google Scholar 

  4. Dzhangaliev, A.D., Dikaya yablonya Kazakhstana (Wild Apple Tree of Kazakhstan), Alma-Ata, 1977, pp. 5–34.

    Google Scholar 

  5. Abdulina, S.A., Spisok sosudistykh rastenii Kazakhstana (Vascular Plants List of Kazakhstan), Almaty, 1999.

    Google Scholar 

  6. Harris, S.A., Robinson, J.P., and Juniper, B.E., Genetic clues to the origin of the apples, Trends Genet., 2002, vol. 18, pp. 426–430.

    Article  CAS  PubMed  Google Scholar 

  7. Popov, M.G., Wild apple and plum in the mountains of Chimgan, in Izbrannye Proizvedeniya (Selected Works), Ashkhabad, 1958, pp. 121–125.

    Google Scholar 

  8. Korovin, E.P., Rastitel’nost’ Srednei Azii i Yuzhnogo Kazakhstana (Vegetation of Central Asia and Southern Kazakhstan), Tashkent, 1962, 2.

    Google Scholar 

  9. Forsline, P.L. and Aldwinckle, H.S., Evaluation of Malus sieversii seedling populations for disease resistance and horticultural traits, Acta Hort., 2004, no. 663, pp. 529–534.

    Google Scholar 

  10. Altukhov, Yu.P., Geneticheskie protsessy v populyatsiyakh (Genetic Processes in Populations), Moscow: Akademkniga, 2003.

    Google Scholar 

  11. Aubakirova, K., Omasheva, M., Ryabushkina, N., et al., Evaluation of five protocols for DNA extraction from leaves of Malus sieversii, Vitis vinifera, and Armeniaca vulgaris, Genet. Mol. Res., 2014, vol. 13, no. 1, pp. 1278–1287.

    Article  CAS  PubMed  Google Scholar 

  12. Hokanson, S.C., Szewc-McFadden, A.K., Lamboy, W.F., and McFerson, G.R., Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus domestica Borkh. core subset collection, Theor. Appl. Genet., 1998, no. 94, pp. 671–683.

    Google Scholar 

  13. Missiaggia, A. and Grattapaglia, D., Plant microsatellite genotyping with 4-color fluorescent detection using multiple-tailed primers, Genet. Mol. Res., 2006, vol. 5, pp. 72–78.

    CAS  PubMed  Google Scholar 

  14. Matschiner, M. and Salzburger, W., TANDEM: integrating automated allele binning into genetics and genomics workflows, Bioinformatics, 2009, vol. 25, no. 15, pp. 1982–1983.

    Article  CAS  PubMed  Google Scholar 

  15. Peakall, R. and Smouse, P.E., GenAlEx 6.5: genetic analysis in Excel: population genetic software for teaching and research update, Bioinformatics, 2012, no. 19, pp. 2537–2539.

    Google Scholar 

  16. Nei, M., Genetic distance between populations, Am. Nat., 1972, vol. 106, pp. 283–292.

    Article  Google Scholar 

  17. Hoffman, J.I. and Amos, W., Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion, Mol. Ecol., 2005, vol. 14, pp. 599–612.

    Article  CAS  PubMed  Google Scholar 

  18. Shannon, C.E., A mathematical theory of communication, Bell Syst. Tech. J., 1948, vol. 27, pp. 379–423.

    Article  Google Scholar 

  19. Wright, S., Evolution and the genetics of populations, in Variability within and among Natural Populations, Chicago: University of Chicago Press, 1978, vol. 4, pp. 242–322.

    Google Scholar 

  20. Lebedeva, N.V. and Krivolutskii, D.A., Biologicheskoe raznoobrazie i metody ego otsenki (Biological Diversity and Methods of Its Evaluation), division 1: Geografiya i monitoring bioraznoobraziya (Geography and Monitoring of Biodiversity), Moscow: Nauchnyi i Uchebno-Metodicheskiy Tsentr, 2002.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to M. E. Omasheva.

Additional information

Original Russian Text © M.E. Omasheva, S.V. Chekalin, N.N. Galiakparov, 2015, published in Genetika, 2015, Vol. 51, No. 7, pp. 759–765.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Omasheva, M.E., Chekalin, S.V. & Galiakparov, N.N. Evaluation of molecular genetic diversity of wild apple Malus sieversii populations from Zailiysky Alatau by microsatellite markers. Russ J Genet 51, 647–652 (2015). https://doi.org/10.1134/S1022795415070108

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795415070108

Keywords

Navigation