Abstract
A set of ten microsatellite loci enabling fairly accurate identification of the chum salmon individuals from geographically distant groups was designed at the Laboratory of Genetic Identification, Vavilov Institute of General Genetics, Russian Academy of Sciences. However, identification of the individuals from closely located basins performed using these loci was not sufficiently precise. The present study was focused on the improvement of the resolution of the method through increasing the number microsatellite loci used. In this study, typing of additional microsatellite loci of chum salmon and evaluation of the change of the degree of identification with the increase of the number of microsatellite loci used is described. It was shown that the identification accuracy permanently increased with the increase of the number of microsatellite markers used.
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Rukhlov, F.N., Zhizn’ tikhookeanskih lososei (Life of Pacific Salmons), Dalnevostochnoe knizhnoe izd., 1982.
Makoedov, A.N., Korotaev, Yu.A., and Antonov, N.P., Aziatskaya keta (Asian Chum Salmon), Petropavlovsk-Kamchatskii: Kamchatskii Nauchno Issledovatelskii Inst. Rybnogo Kh. Okeanographii, 2009.
Yasuyuki Myyakoshy, Hyrokazu Urabe, Mytsuhyro Nagata, et al., The Principals of Conservation of Wild Salmon in the Rivers of Hokkaido, Japan, in Ecological Interactions and Artificial Breeding of Wild Salmon, Portland, 2010.
Kaev, A.M., Sostoyanie zapasov kety v 2009 g. v osnovnykh raionakh ee vosproizvodstva v Sakhalinskoi oblasti (Chum Salmon Resources 2009 in the Main Regions of Its Reproduction in Sakhalin Region), Vladivostok: TINRO-tsentr, 2009.
Zhivotovskii, L.A., Afanas’ev, K.I., Rubtsova, G.I., et al., Creation of the DNA Data Base for Solving Reproduction, Identification, and Certification Problems in Pacific Salmon Population at the Example of Chum Salmon of the Iturup Island, Vopr. Rybolovstva, 2008, no. 1(33), pp. 96–109.
Zhivotovskii, L.A., Rubtsova, G.I., Shitova, M.V., et al., Microsatellite Chum Salmon DNA Database of Russian Far East, in Realization of Concept of the Far East Watershed Program of Pacific Salmon Research, Shuntov V.P., Ed., Vladivostok: TINRO-tsentr, 2010, Byull., no. 5, pp. 53–63.
Afanasiev, K.I., Rubtsova, G.A., Shitova, T.V., et al., Interregional Differentiation of Chum Salmon from Sakhalin and South Kuril Inferred from Microsatellite Markers, Russ. J. Genet., 2008, vol. 44, no. 7.
Zhivotovskii, L.A., Rubtsova, G.I., Shitova, M.V., et al., Genetic Principles of Ecological Certification of Pacific Salmon Fisheries, in Realization of Concept of the Far East Watershed Program of Pacific Salmon Research, Shuntov V.P., Ed., Vladivostok: TINROtsentr, 2009, Byull., no. 4, pp. 117–125.
Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor: Cold Spring Harbor Lab., 1989.
Banks, M.A., Blouin, M.S., Baldwin, B.A., et al., Isolation and Inheritance of Novel Microsatellites in Chinook Salmon (Oncorhynchus tschawytscha), Am. Genet. Assoc., 1999, vol. 90, pp. 281–288.
Buchholz, W.G., Miller, S.J., and Spearman, W.J., Isolation and Characterization of Chum Salmon Microsatellite Loci and Use across Species, Anim. Genet., 2001, vol. 32, no. 3, pp. 162–165.
Greig, C., Jacobson, D.P., and Banks, M.A., New Tetranucleotide Microsatellites for Fine-Scale Discrimination among Endangered Chinook Salmon (Oncorhynchus tshawytscha), Mol. Ecol., 2003, vol. 3, no. 3, pp. 376–379.
Gharrett, A.J., Fuller, S.A., Riley, R.J., et al., Developing DNA Markers for the Analysis of Bering Sea Chum Salmon, Arctic Yukon Kuskokwim Sustainable Salmon Initiative Project: Final Product, 2007.
Nelson, R.J., and Beacham, T.D., Isolation and Cross Species Amplification of Microsatellite Loci Useful for Study of Pacific Salmon, Anim. Genet., 1999, vol. 30, pp. 225–244.
Olsen, J.B. and Seeb, J.E., Genetic Interpretation of Broad-Scale Microsatellite Polymorphism in Odd-Year Pink Salmon, Trans. Am. Fisheries Soc., 1998, vol. 127, pp. 535–550.
Olsen, J.B., Bentzen, P., and Seeb, J.E., Characterization of Seven Microsatellite Loci Derived from Pink Salmon, Mol. Ecol., 1998, vol. 7, no. 8, pp. 1087–1089.
Olsen, J.B. and Seeb, J.E., Genetic Interpretation of Broad-Scale Microsatellite Polymorphism in Odd-Year Pink Salmon, Trans. Am. Fish. Soc., 1998, vol. 127, pp. 535–550.
Rexroad, III, C.E. Coleman, R.L., Martin, A.M., et al., Thirty-Five Polymorphic Microsatellite Markers for Rainbow Trout (Oncorhynchus mykiss), Anim. Genet., 2001, vol. 32, pp. 316–331.
Rexroad, III, C.E. Coleman, R.L., Martin, A.M., et al., Development of Rainbow Trout Microsatellite Markers from Repeat Enriched Libraries, Mar. Biotechnol., 2002, vol. 3, pp. 12–16.
Sanchez, J.A., Clabby, C., Ramos, D., et al., Protein and Microsatellite Single Locus Variability in Salmo salar L. (Atlantic Salmon), Heredity, 1996, vol. 77, pp. 423–432.
Small, M.P., Beacham, T.D., Withler, R.E., and Nelson, R.J., Discriminating Coho Salmon (Oncorhynchus kisutch) Populations within Fraser River, British Columbia, Using Microsatellite DNA Markers, Mol. Ecol., 1998, vol. 7, no. 2, pp. 141–155.
Smith, C.T., Koop, B.F., and Nelson, R.J., Isolation and Characterization of Coho Salmon (Oncorhynchus kisutch) Microsatellites and Their Use in Other Salmonids, Mol. Ecol., 1998, vol. 7, pp. 1613–1621.
Williamson, K.S., Cordes, J.F., and May, B., Characterization of Microsatellite Loci in Chinook Salmon (Oncorhyncus tshawytscha) and Cross-Species Amplification in Other Salmonids, Mol. Ecol. Notes, 2002, vol. 2, pp. 17–19.
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Original Russian Text © P.K. Afanasiev, L.A. Rubtsova, M.V. Shitova, E.G. Shaykhaev, L.A. Zhivotovsky, 2011, published in Genetika, 2011, Vol. 47, No.11, pp. 1473–1480.
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Afanasiev, P.K., Rubtsova, G.A., Shitova, M.V. et al. Extension of a set of microsatellite markers for more precise identification of chum salmon Oncorhynchus keta walbaum. Russ J Genet 47, 1307–1313 (2011). https://doi.org/10.1134/S1022795411110020
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DOI: https://doi.org/10.1134/S1022795411110020