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Molecular genetic characterization of the regulatory region of the Xist gene in the common vole Microtus rossiaemeridionalis

  • Molecular Genetics
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Abstract

Two conserved regions were identified as a result of interspecific comparison of the 5′-region of the Xist gene, which is the key player in the process of X-chromosome inactivation in mammalian females. The first region corresponds to the minimal promoter, and the second spans between −480 bp and −400 bp from the start of Xist transcription. Footprinting experiments revealed protected regions corresponding to the potential binding sites for TBP, SP1, AP1, SRY, ER, and some other transcription factors. They also demonstrated the interaction with the minimal promoter of the human recombinant transcription factor SP1 in vitro and of the transcription factor CTCF in vivo. Experiments with reporter constructs showed that repressors of Xist transcription were located between −100 bp and −200 bp and between −300 bp and −400 bp and activators of Xist transcription were located between −200 bp and −300 bp and between −400 bp and −500 bp.

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References

  1. Avner, P. and Heard, E., X-Chromosome Inactivation: Counting, Choice and Initiation, Nat. Rev. Genet., 2001, vol. 2, pp. 59–67.

    Article  PubMed  CAS  Google Scholar 

  2. Lyon, M.F., Gene Action in the X-Chromosome of the Mouse (Mus musculus L.), Nature, 1961, vol. 190, pp. 372–373.

    Article  PubMed  CAS  Google Scholar 

  3. Brockdorff, N., The Role of Xist in X-Inactivation, Curr. Opin. Genet. Dev., 1998, vol. 8, pp. 328–333.

    Article  PubMed  CAS  Google Scholar 

  4. Chureau, C., Prissette, M., Bourdet, A., et al., Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine, Genome Res., 2002, vol. 12, pp. 894–908.

    PubMed  CAS  Google Scholar 

  5. Nesterova, T.B., Slobodyanyuk, S.Y., Elisaphenko, E.A., et al., Characterization of the Genomic XIST Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence, Genome Res., 2001, vol. 11, pp. 833–849.

    Article  PubMed  CAS  Google Scholar 

  6. Zakiyan, S.M., Nesterova, T.B., Cheryaukene, O.V., and Bochkarev, M.N., Heterochromatin as a Factor Affecting X-Inactivation In Interspecific Female Common Vole Hybrids (Microtidae, Rodentia), Russ. J. Genet., 1991, vol. 27, no. 3, pp. 425–433.

    Google Scholar 

  7. Elisaphenko, E.A., Kolesnikov, N.N., Shevchenko, A.I., et al., A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements, PLoS ONE, 2008, vol. 3, p. e2521.

    Article  PubMed  Google Scholar 

  8. Sheardown, S.A., Newall, A.E., Norris, D.P., et al., Regulatory Elements in the Minimal Promoter Region of the Mouse XIST Gene, Gene, 1997, vol. 203, pp. 159–168.

    Article  PubMed  CAS  Google Scholar 

  9. Pillet, N., Bonny, C., and Schorderet, D.F., Characterization of the Promoter Region of the Mouse XIST Gene, Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 12515–12519.

    Article  PubMed  CAS  Google Scholar 

  10. Hendrich, B.D., Plenge, R.M., and Willard, H.F., Identification and Characterization of the Human XIST Gene Promoter: Implications for Models of X Chromosome Inactivation, Nucleic Acids Res., 1997, vol. 25, pp. 2661–2671.

    Article  PubMed  CAS  Google Scholar 

  11. Komura, J., Sheardown, S.A., Brockdorff, N., et al., In vivo Ultraviolet and Dimethyl Sulfate Footprinting of the 5′-Region of the Expressed and Silent XIST Alleles, J. Biol. Chem., 1997, vol. 272, pp. 10975–10980.

    Article  PubMed  CAS  Google Scholar 

  12. Pugacheva, E.M., Tiwari, V.K., Abdullaev, Z., et al., Familial Cases of Point Mutations in the XIST Promoter Reveal a Correlation between CTCF Binding and Pre-Emptive Choices of X Chromosome Inactivation, Hum. Mol. Genet., 2005, vol. 14, pp. 953–965.

    Article  PubMed  CAS  Google Scholar 

  13. Altschul, S.F., Gish, W., Miller, W., et al., Basic Local Alignment Search Tool, J. Mol. Biol., 1990, vol. 215, pp. 403–410.

    PubMed  CAS  Google Scholar 

  14. Pearson, W.R. and Lipman, D.J., Improved Tools for Biological Sequence Comparison, Proc. Natl. Acad. Sci. USA, 1988, vol. 85, pp. 2444–2448.

    Article  PubMed  CAS  Google Scholar 

  15. Schwartz, S., Zhang, Z., Frazer, K.A., et al., PipMaker—A Web Server for Aligning Two Genomic DNA Sequences, Genome Res., 2000, vol. 10, pp. 577–586.

    Article  PubMed  CAS  Google Scholar 

  16. Jeanmougin, F., Thompson, J.D., Gouy, M., et al., Multiple Sequence Alignment with Clustal X, Trends Biochem. Sci., 1998, vol. 23, pp. 403–405.

    Article  PubMed  CAS  Google Scholar 

  17. Cartharius, K., Frech, K., Grote, K., et al., MatInspector and Beyond: Promoter Analysis Based on Transcription Factor Binding Sites, Bioinformatics, 2005, vol. 21, pp. 2933–2942.

    Article  PubMed  CAS  Google Scholar 

  18. Wingender, E., Chen, X., Fricke, E., et al., The TRANSFAC System on Gene Expression Regulation, Nucleic Acids Res., 2001, vol. 29, pp. 281–283.

    Article  PubMed  CAS  Google Scholar 

  19. Jurka, J., Klonowski, P., Dagman, V., and Pelton, P., CENSOR—A Program for Identification and Elimination of Repetitive Elements from DNA Sequences, Comput. Chem., 1996, vol. 20, pp. 119–121.

    Article  PubMed  CAS  Google Scholar 

  20. Dyer, R.B. and Herzog, N.K., Isolation of Intact Nuclei for Nuclear Extract Preparation From a Fragile B-Lymphocyte Cell Line, BioTechniques, 1995, vol. 19, pp. 192–195.

    PubMed  CAS  Google Scholar 

  21. Letovsky, J. and Dynan, W.S., Measurement of the Binding of Transcription Factor Sp1 to a Single GC Box Recognition Sequence, Nucleic Acids Res., 1989, vol. 17, pp. 2639–2653.

    Article  PubMed  CAS  Google Scholar 

  22. Ohlsson, R., Renkawitz, R., and Lobanenkov, V., CTCF Is a Uniquely Versatile Transcription Regulator Linked to Epigenetics and Disease, Trends Genet., 2001, vol. 17, pp. 520–527.

    Article  PubMed  CAS  Google Scholar 

  23. Bell, A.C., West, A.G., and Felsenfeld, G., The Protein CTCF Is Required for the Enhancer Blocking Activity of Vertebrate Insulators, Cell, 1999, vol. 98, pp. 387–396.

    Article  PubMed  CAS  Google Scholar 

  24. Kanduri, C., Pant, V., Loukinov, D., et al., Functional Association of CTCF with the Insulator Upstream of the H19 Gene Is Parent of Origin-Specific and Methylation-Sensitive, Curr. Biol., 2000, vol. 10, pp. 853–856.

    Article  PubMed  CAS  Google Scholar 

  25. Lee, M. and Struhl, K., Multiple Functions of the Non-conserved N-Terminal Domain of Yeast TATA-Binding Protein, Genetics, 2001, vol. 158, pp. 87–93.

    PubMed  CAS  Google Scholar 

  26. Breathnach, R. and Chambon, P., Organization and Expression of Eukaryotic Split Genes Coding for Proteins, Annu. Rev. Biochem., 1981, vol. 50, pp. 349–383.

    Article  PubMed  CAS  Google Scholar 

  27. Pugh, B.F. and Tjian, R., Mechanism of Transcriptional Activation by Sp1: Evidence for Coactivators, Cell, 1990, vol. 61, pp. 1187–1197.

    Article  PubMed  CAS  Google Scholar 

  28. Macleod, D., Charlton, J., Mullins, J., and Bird, A.P., Sp1 Sites in the Mouse aprt Gene Promoter Are Required to Prevent Methylation of the CpG Island, Genes Dev., 1994, vol. 8, pp. 2282–2292.

    Article  PubMed  CAS  Google Scholar 

  29. Wylie, A.A., Murphy, S.K., Orton, T.C., and Jirtle, R.L., Novel Imprinted DLK1/GTL2 Domain on Human Chromosome 14 Contains Motifs That Mimic Those Implicated in IGF2/H19 Regulation, Genome Res., 2000, vol. 10, pp. 1711–1718.

    Article  PubMed  CAS  Google Scholar 

  30. Ryseck, R.P. and Bravo, R., c-JUN, JUN B, and JUN D Differ in Their Binding Affinities to AP-1 and CRE Consensus Sequences: Effect of FOS Proteins, Oncogene, 1991, vol. 6, pp. 533–542.

    PubMed  CAS  Google Scholar 

  31. Kel, O.V., Romaschenko, A.G., Kel, A.E., et al., A Compilation of Composite Regulatory Elements Affecting Gene Transcription in Vertebrates, Nucleic Acids Res., 1995, vol. 23, pp. 4097–4103.

    Article  PubMed  CAS  Google Scholar 

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Correspondence to S. M. Zakian.

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Original Russian Text © K.E. Orishchenko, E.A. Elisaphenko, A.E. Kel, S.M. Zakian, 2009, published in Genetika, 2009, Vol. 45, No. 10, pp. 1341–1352.

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Orishchenko, K.E., Elisaphenko, E.A., Kel, A.E. et al. Molecular genetic characterization of the regulatory region of the Xist gene in the common vole Microtus rossiaemeridionalis . Russ J Genet 45, 1182–1191 (2009). https://doi.org/10.1134/S1022795409100056

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  • DOI: https://doi.org/10.1134/S1022795409100056

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