Abstract
Using the data on complete sequences of cytochrome b gene, phylogenetic relationships were studied among the Stenocephalemys s. lat. (Stenocephalemys spp. + Praomys albipes) murine rodents, inhabiting adjacent altitudinal belts of the isolated Ethiopian mountain massifs, and among the related Praomys s. lat. species. Extremely low resolution of the relationships among the main Praomys s. lat. lineages hampered identification of the nearest sister group for the Stenocephalemys s. lat. “Ethiopian” clade, monophyly of which was strongly supported. Sister relationships between P. albipes and S. griseicauda (implying “accelerated” morphological and chromosomal evolution upon the formation of the former species), as well as between S. albocaudata and the recently described novel chromosomal form of Stenocephalemus sp. A (2n = 50; NFa = 56) were demonstrated. Definite discordance between the rates of their molecular, chromosomal, and morphological evolution was revealed. Based on phylogenetic reconstructions and the estimates of the divergence time, obtained by use of molecular clock method, an attempt to draw an evolutionary scenario for the group examined was made. The obtained data were compared to those for Sigmodontinae species complexes, distributed across a marked altitudinal gradient on the Andean slopes. It was shown that molecular genetic data on the rodents from mountain tropics did not support the gradient model of diversification, based on the possibility of diversification of the forms up to their achievement of the species rank (without interruption of the gene flow between them) due to differently directed selection across a strong environmental gradient.
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References
Vorontsov, N.N., Razvitie evolyutsionnykh idei v biologii (Development of Evolutionary Ideas in Biology), Moscow: UNTs DO Mosk. Gos. Univ., 1999.
Vences, M., Madagaskar As a Model Region for the Study of Tempo and Pattern in Adaptive Radiations, African Biodiversity: Molecules, Organisms, Ecosystems, Huber, B.A., Sinclair, B.J., and Lampe, K.-H., Eds., New York: Springer, 2005, pp. 69–84.
Lavrenchenko, L.A., Milishnikov, A.N., Aniskin, V.M., and Warshavsky, A.A., Systematics and Phylogeny of the Genus Stenocephalemys Frick, 1914 (Rodentia, Muridae): A Multidisciplinary Approach, Mammalia, 1999, vol. 63, pp. 475–494.
Musser, G.G. and Carleton, M.D., Family Muridae, Mammal Species of the World—A Taxonomic and Geographic Reference, Wilson, D.E. and Reeder, D.A.M., Eds., Washington, DC: Smithsonian Inst. Press, 1993, pp. 501–756.
Fadda, C., Corti, M., and Verheyen, E., Molecular Phylogeny of Myomys/Stenocephalemys Complex and Its Relationships with Related African Genera, Biochem. Syst. Ecol., 2001, vol. 29, pp. 585–596.
Lecompte, E., Granjon, L., Kerbis Peterhans, J., and Denys, C., Cytochrome b-Based Phylogeny of the Praomys Group (Rodentia, Muridae): A New African Radiation?, C. R. Biol., 2002, vol. 325, pp. 827–840.
Bulatova, N.Sh. and Lavrenchenko, L.A., Possible Karyological Affinities of Small Mammals from North of the Ethiopian Plateau, African Biodiversity: Molecules, Organisms, Ecosystems, Huber, B.A., Sinclair, B.J., and Lampe, K.-H., Eds., New York: Springer, 2005, pp. 315–319.
Smith, T.B., Wayne, R.K., Girman, D., and Bruford, M., A Role for Ecotones in Generating Rainforest Biodiversity, Science, 1997, vol. 276, pp. 1855–1857.
Orr, M.R. and Smith, T.B., Ecology and Speciation, Trends Ecol. Evol., 1998, vol. 13, pp. 502–506.
Moritz, C., Patton, J.L., Schneider, C.J., and Smith, T.B., Diversification of Rainforest Faunas: An Integrated Molecular Approach, Annu. Rev. Ecol. Syst., 2000, vol. 31, pp. 533–563.
Rice, W.R. and Hostert, E.E., Laboratory Experiments on Speciation: What Have We Learned in 40 Years?, Evolution, 1993, vol. 47, pp. 1637–1653.
Doebeli, M. and Dieckmann, U., Speciation along Environmental Gradients, Nature, 2003, vol. 421, pp. 259–264.
Mizera, F. and Meszéna, G., Spatial Niche Packing, Character Displacement and Adaptive Speciation along an Environmental Gradient, Evol. Ecol. Res., 2003, vol. 5, pp. 1–20.
Smith, T.B., Calsbeek, R., Wayne, R.K., et al., Testing Alternative Mechanisms of Evolutionary Divergence in an African Rain Forest Passerine Bird, J. Evol. Biol., 2005, vol. 18, pp. 257–268.
Patton, J. and Smith, M.F., mtDNA Phylogeny of Andean Mice: A Test of Diversification across Ecological Gradients, Evolution, 1992, vol. 46, pp. 174–183.
Mathew, C.G., The Isolation of High-Molecular-Weight Eukaryotic DNA, Methods in Molecular Biology, Walker, J.M., Ed., New York: Humana, 1984, pp. 31–34.
Swofford, D.L., PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Sunderland, Mass.: Sinauer, 2000.
Posada, D. and Crandall, K.A., Modeltest: Testing the Model of DNA Substitution, Bioinformatics, 1998, vol. 14, pp. 817–818.
Felsenstein, J., Confidence Limits on Phylogenies: An Approach Using the Bootstrap, Evolution, 1985, vol. 39, pp. 783–791.
Tajima, F., Simple Methods for Testing Molecular Clock Hypothesis, Genetics, 1993, vol. 135, pp. 599–607.
Kumar, S., Tamura, K., Jakobsen, B., and Nei, M., MEGA2: Molecular Evolutionary Genetics Analysis Software, Tempe: Arizona State Univ., 2001.
Felsenstein, J., Evolutionary Trees from DNA Sequences: A Maximum Likelihood Approach, J. Mol. Evol., 1981, vol. 17, pp. 368–376.
Jaeger, J.-J., Tong, H., and Denys, C., Age de la divergence Mus-Rattus: Comparaison des donnees paleontologique et moleculaires, C. R. Acad. Sci. Paris: Ser. II, 1986, vol. 302, pp. 917–922.
Jaarola, M., Martinkova, N., Gunduz, I., et al., Molecular Phylogency of the Speciose Vole Genus Microtus (Arvicolinae, Rodentia) Inferred from Mitochondrial DNA Sequences, Mol. Phyl. Evol., 2004, vol. 33, pp. 647–663.
Irwin, D.M., Kocher, T.D., and Wilson, A.C., Evolution of the Cytochrome b Gene of Mammals, J. Mol. Evol., 1991, vol. 32, pp. 128–144.
Davidson, A. and Rex, D.C., Age of Volcanism and Rifting in south Western Ethiopia, Nature, 1980, vol. 283, pp. 657–658.
Bonnefille, R., Evidence for a Cooler and Drier Climate in the Ethiopian Upland 2.5 Myr Ago, Nature, 1983, vol. 303, pp. 487–491.
Martin, Y., Gerlach, G., Schlotterer, C., and Meyer, A., Molecular Phylogeny of European Muroid Rodents Based on Complete Cytochrome b Sequences, Mol. Phyl. Evol., 2000, vol. 16, pp. 37–47.
Patton, J.L., Myers, P., and Smith, M.F., Vicariant Versus Gradient Models of Diversification: The Small Mammal Fauna of Eastern Andean Slopes of Peru, Vertebrates in the Tropics, Peters, G. and Hutterer, R., Eds., Bonn: Koenig, 1990, pp. 355–371.
Smith, M.F., Kelt, D.A., and Patton, J.L., Testing Models of Diversification in Mice in the Abrothrix olivaceus/xanthorhinus Complex in Chile and Argentina, Mol. Ecol., 2001, vol. 10, pp. 397–405.
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Original Russian Text © L.A. Lavrenchenko, E. Verheyen, 2006, published in Genetika, 2006, Vol. 42, No. 4, pp. 549–557.
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Lavrenchenko, L.A., Verheyen, E. Evolutionary relationships among narrow-headed rats (genus Stenocephalemys, muridae, rodentia) inferred from complete cytochrome b gene sequences. Russ J Genet 42, 439–446 (2006). https://doi.org/10.1134/S1022795406040119
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DOI: https://doi.org/10.1134/S1022795406040119