Abstract
Cold stress is one major threats to field crops. The cold tolerant ability is a key limiting factor for the popularization of peanut (Arachis hypogaea L.) in cold areas. Our previous research showed three key metabolic change time points of peanut buds in response to low temperature. The present study applied iTRAQ proteomic to further quantify differentially expressed proteins in three key metabolic change time points. A total of 2684 non-redundant proteins and 333 differentially expressed proteins across the three cold stress treatment points were identified. The results enrich the cold stress regulation network and provide useful information for further improving the ability of peanut under cold stress.
Similar content being viewed by others
REFERENCES
Beck, E.H., Heim, R., and Hansen, J., Plant resistance to cold stress: mechanisms and environmental signals triggering frost hardening and dehardening, J. Biosci., 2004, vol. 29, p. 449.
Fowler, D.B., Chauvin, L.P., Limin, A.E., and Sarhan, F., The regulatory role of vernalization in the expression of low-temperature-induced genes in wheat and rye, Theor. Appl. Genet., 1996, vol. 93, p. 554.
Jaglo-Ottosen, K.R., Glimour, S.J., Zarka, D.G., Schabenberger, O., and Thomashow, M.F., Arabidopsis CBF1 overexpression induces cor genes and enhances freezing tolerance, Science, 1998, vol. 280, p. 104.
Orvar, B.L., Sangwan, V., Omann, F., and Dhindsa, R.S., Early steps in cold sensing by plant cells: the role of actin cytoskeleton and membrane fluidity, Plant J., 2000, vol. 23, p. 785.
Lee, B.H., Henderson, D.A., and Zhu, J.K., The Arabidpsis cold-responsive transcriptome and its regulation by ICE1, Plant Cell, 2005, vol. 17, p. 3155.
Pradet-Balade, B., Boulme, F., Beug, H., Mullner, E.W., and Garcia-Sanz, J.A., Translation control: bridging the gap between genomics and proteomics, Trends Biochem. Sci., 2001, vol. 26, p. 225.
Greenbaum, D., Colangelo, C., Williams, K., and Gerstein, M., Comparing protein abundance and mRNA expression levels on a genomic scale, Genome Biol., 2003, vol. 4, p. 117.
Stockinger, E.J., Gilmour, S.J., and Thomashow, M.F., Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcription activator that binds to the C repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit, Proc. Natl. Acad. Sci. USA, 1997, vol. 94, p. 1035.
O’Farrell, P.H., High resolution two-dimensional electrophoresis of proteins, J. Biol. Chem., 1975, vol. 250, p. 4007.
Beckett, P., The basics of 2D DIGE, Methods Mol. Biol., 2012, vol. 854, p. 9.
Lan, P., Li, W., Wen, T.N., Shiau, J.Y., Wu, Y.C., Lin, W., and Schmidt, W., iTRAQ protein profile analysis of Arabidopsis roots reveals new aspects critical for iron homeostasis, Plant Physiol., 2011, vol. 155, p. 821.
Cui, S.X., Huang, F., Wang, J., Ma, X., Cheng, Y.S., and Liu, J.Y., A proteomic analysis of cold stress response in rice seedling, Proteomics, 2005, vol. 5, p. 3162.
Wang, X., Shan, X., Wu, Y., Su, S., Li, S., Liu, H., Han, J., Xue, C., and Yuan, Y., iTRAQ-based quantitative proteomic analysis reveals new metabolic pathways responding to chilling stress in maize seedlings, J. Proteomics, 2016, vol. 146, p. 14.
Qin, J., Gu, F., Liu, D., Yin, C.C., Zhao, S.J., Chen, H., Zhang, J., Yang, C., Zhan, X., and Zhang, V.C., Proteomic analysis of elite soybean Jidou17 and its parents using iTRAQ-based quantitative approaches, Proteome Sci., 2013, vol. 11, p. 12.
Wang, X.J., Sun, D.L., Bian, N.F., Shen, Y., Zhang, Z.M., Wang, X., Xu, Z.J., and Qi, Y.J., Metabolic changes of peanut (Arachis hypogaea L.) buds in response to low temperature (LT), S. Afr. J. Bot., 2017, vol. 111, p. 341.
Le, M.Q., Engelsberger, W.R., and Hincha, D.K., Natural genetic variation in acclimation capacity at sub-zero temperatures after cold acclimation at 4°C in different Arabidopsis thaliana accessions, Cryobiology, 2008, vol. 57, p. 104.
Yan, S.P., Zhang, Q.Y., Tang, Z.C., Su, W.A., and Sun, W.N., Comparative proteomic analysis provides new insights into chilling stress responses in rice, Mol. Cell Proteomics, 2006, vol. 5, p. 484.
Druck, T., Gu, Y., Prabhala, G., Cannizzaro, L.A., Park, S.H., Huebner, K., and Keen, J.H., Chromosome localization of human genes for clathrin adaptor polypeptides AP2 beta and AP50 and the clathrin-binding protein, VCP, Genomics, 1995, vol. 30, p. 94.
Imamura, S., Ojima, N., and Yamashita, M., Cold-inducible expression of the cell division cycle gene CDC48 and its promotion of cell proliferation during cold acclimation in zebrafish cells, FEBS Lett., 2003, vol. 549, p. 14.
Aguirre, A.A., Vicente, A.M., Hardwick, S.W., Alvelos, D.M., Mazzon, R.R., Luisi, B.F., and Marques, M.V., Association of the cold-shock DEAD-box RNA helicase RhlE to the RNA degradosome in Caulobacter crescentus,J. Bacteriol., 2017, vol. 199: e00135.
Hu, W., Hu, G., and Han, B., Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice, Plant Sci., 2009, vol. 176, p. 583.
Liu, H., Ouyang, B., Zhang, J., Wang, T., Li, H., Zhang, Y., Yu, C., and Ye, Z., Differential modulation of photosynthesis, signaling, and transcriptional regulation between tolerant and sensitive tomato genotypes under cold stress, PLoS One, 2012, vol. 7: e50785.
Zhang, J., Yuan, H., Yang, Y., Fish, T., Lyi, S.M., Thannhauser, T.W., Zhang, L., and Li, L., Plastid ribosomal protein S5 is involved in photosynthesis, plant development, and cold stress tolerance in Arabidopsis,J. Exp. Bot., 2016, vol. 67, p. 2731.
Wang, L., Li, H., Zhao, C., Li, S., Kong, L., Wu, W., Kong, W., Liu, Y., Wei, Y., Zhu, J.K., and Zhang, H., The inhibition of protein translation mediated by AtGC-N1 is essential for cold tolerance in Arabidopsis thaliana,Plant Cell Environ., 2017, vol. 40, p. 56.
Jackson, R.J., Hellen, C.U., and Pestova, T.V., The mechanism of eukaryotic translation initiation and principles of its regulation, Nat. Rev. Mol. Cell Biol., 2010, vol. 11, p. 113.
Sokabe, M. and Fraser, C.S., A helicase-independent activity of eIF4A in promoting mRNA recruitment to the human ribosome, Proc. Natl. Acad. Sci. USA, 2017, vol. 114, p. 6304.
Allen, G.S. and Frank, J., Structural insights on the translation initiation complex: ghosts of a universal initiation complex, Mol. Microbiol., 2007, vol. 63, p. 941.
Lee, S., Truesdell, S.S., Bukhari, S.I., Lee, J.H., LeTonqueze, O., and Vasudevan, S., Upregulation of eIF5B controls cell-cycle arrest and specific developmental stages, Proc. Natl. Acad. Sci. USA, 2014, vol. 111: e4315.
Lei, L., Shi, J., Chen, J., Zhang, M., Sun, S., Xie, S., Li, X., Zeng, B., Peng, L., Hauck, A., Zhao, H., Song, W., Fan, Z., and Lai, J., Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress, Plant J., 2015, vol. 84, p. 1206.
Funding
This research was supported by Basal Research Fund of Jiangsu Academy of Agricultural Sciences ZX(18)2014, Xuzhou Science and Technology Project KC16NG068, and Liaoning S&T Project (2014024, 2014201002).
Author information
Authors and Affiliations
Contributions
X.W. and Y.S. contributed equally to this work. X.W. and Y.S. performed the experiments. D.S., N.B. and P.S analysed the data. Z.Z., Z.C. and Y.L. helped with experiments. Y.S. and X.W. provided overall supervision, supervised the experiments and wrote the manuscript.
Corresponding authors
Ethics declarations
This article does not contain any studies using animals as objects or any research involving people as objects of research. The authors declare that they have no conflict of interest.
Additional information
Abbreviations: iTRAQ—isobaric tags for relative and absolute quantitation; 2D—two-dimensional; 2D DIGE—2D difference gel electrophresis.
Supplementary material
Rights and permissions
About this article
Cite this article
Wang, X.J., Shen, Y., Sun, D.L. et al. iTRAQ-Based Proteomic Reveals Cell Cycle and Translation Regulation Involving in Peanut Buds Cold Stress. Russ J Plant Physiol 67, 103–110 (2020). https://doi.org/10.1134/S1021443720010239
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1021443720010239