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Polymorphism of Walleye Pollock Gadus chalcogrammus Mitochondrial DNA Control Region in the Asiatic Part of the Range and its Phylogeographic History

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Abstract

The phylogeographic analysis of Gadus chalcogrammus from the Asian part of the range (the western part of the Bering Sea, the Sea of Okhotsk and the Sea of Japan, the Pacific waters of the Kuril Islands and Kamchatka) based on data on the polymorphism of the mtDNA control region fragment (D-loop, 526 bp) was performed for the first time using large-scale material (1162 individuals from 38 samples). The obtained results indicate the existence of two large groups in the surveyed water area: one is localized in the western part of the Bering Sea, and the other is formed by samples from the Sea of Japan and the Sea of Okhotsk and from the Pacific waters of the Kuril Islands and Kamchatka. An unusually low level of polymorphism in the mtDNA control region of Gadus chalcogrammus was revealed, which was also previously found in G. macrocephalus and is probably due to similar microevolutionary processes that took place in the past in both species.

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REFERENCES

  1. Bae, S.E., Kim, E.-M., Park, J.Y., and Kim, J.-K., Population genetic structure of the grass puffer (Tetraodontiformes: Tetraodontidae) in the northwestern Pacific revealed by mitochondrial DNA sequences and microsatellite loci, Mar. Biodiversity, 2020, vol. 50, no. 19. https://doi.org/10.1007/s12526-020-01042-2

  2. Bailey, K.M., Powers, D.M., Quattro, J.M., et al., Population ecology and structure dynamics of walleye pollock (Theragra chalcogramma), in Dynamics of the Bering Sea, Thomas, R.L. and Ohtani, K., Eds., Fairbanks: Univ. of Alaska Sea Grant, 1999, pp. 581–614.

    Google Scholar 

  3. Balykin, P.A., Fecundity of pollock in the western part of the Bering Sea, Vopr. Ikhtiol., 1986, vol. 26, no. 1, pp. 164–168.

    Google Scholar 

  4. Balykin, P.A., Interspecific relationships between Pacific cod and pollock, Issled. Vodn. Biol. Resur. Kamchat. Sev.-Zap. Chasti Tikhogo Okeana, 2007, no. 9, pp. 230–234.

  5. Balykin, P.A. and Zolotov, A.O., Interspecies relations of hydrobionts as a factor of population dynamics, Issled. Vodn. Biol. Resur. Kamchat. Sev.-Zap. Chasti Tikhogo Okeana, 2010, no. 17, pp. 24–29.

  6. Bohonak, A.J., Dispersal, gene flow, and population structure, Quart. Rev. Biol., 1999, vol. 74, no. 1, pp. 21–45.

    Article  CAS  Google Scholar 

  7. BOLDSystem, Barcode of life data systems, 2021. http://www.boldsystems.org. Assessed May 11, 2021.

  8. Bouckaert, R., Heled, J., Kühnert, D., et al., BEAST 2: a software platform for Bayesian evolutionary analysis, PLoS Comput. Biol., 2014, vol. 10, no. 4, p. e1003537. https://doi.org/10.1371/journal.pcbi.1003537

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Briggs, J.C., Global biogeography, in Developments in Paleontology and Stratigraphy, Amsterdam: Elsevier, 1995, vol. 14.

    Google Scholar 

  10. Bulatov, O.A., Promysel i zapasy mintaya Beringova morya. Analiticheskaya i referativnaya informatsiya (Fishing and Stocks of Pollock in the Bering Sea: Analytical and Referative Information), Moscow: Vseross. Nauchno-Issled. Proekt.-Konstr. Inst. Ekon., Inf. Avtom. Sist. Upr. Rybn. Khoz., 2003, no. 2, pp. 101–114.

  11. Bulatov, O.A., Walleye pollock: global overview, Fish. Sci., 2014, vol. 80, no. 2, pp. 109–116. https://doi.org/10.1007/s12562-014-0715-0

    Article  CAS  Google Scholar 

  12. Bulatov, O.A., Forecasting of stocks and the strategy of pollock fishing, Tr. VNIRO, 2015, vol. 157, pp. 45–70.

    Google Scholar 

  13. Bulatov, O.A., Pollock from the open part of the Bering Sea, Vopr. Rybolov., 2020, vol. 21, no. 4, pp. 379–395. https://doi.org/10.36038/0234-2774-2020-21-4-379-395

    Article  Google Scholar 

  14. Canino, M.F., Spies, I.B., and Hauser, L., Development and characterization of novel di- and tetranucleotide microsatellite markers in Pacific cod (Gadus macrocephalus), Mol. Ecol. Notes, 2005, vol. 5, pp. 908–910. https://doi.org/10.1111/j.1471-8286.2005.01109.x

    Article  CAS  Google Scholar 

  15. Chuchukalo, V.I. and Napazakov, V.V., Feeding and trophic status of Pacific cod Gadus macrocephalus in the Far Eastern seas of Russia, in Tikhookeanskaya treska dal’nevostochnykh vod Rossii (Pacific Cod in Russian Far East Waters), Orlov, A.M., Ed., Moscow: VNIRO, 2014, pp. 212–233.

  16. Chuchukalo, V.I., Radchenko, V.I., Nadtochii, V.A., et al., Feeding and some ecological features of cods on the West Kamchatka shelf in summer 1996, Vopr. Ikhtiol., 1996, vol. 39, no. 3, pp. 362–374.

    Google Scholar 

  17. Clement, M., Posada, D., and Crandall, K.A., TCS: a computer program to estimate gene genealogies, Mol. Ecol., 2000, vol. 9, pp. 1657–1659.

    Article  CAS  Google Scholar 

  18. D’Aloia, C.C., Bogdanowicz, S.M., Francis, R.K., et al., Patterns, causes, and consequences of marine larval dispersal, Proc. Natl. Acad. Sci. U.S.A., 2015, vol. 112, no. 45, pp. 13940–13945. https://doi.org/10.1073/pnas.1513754112

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Drummond, A.J., Ashton B., Buxton, S., et al., Geneious v. 5.4, 2011. http://www.geneious.com/.

  20. Dunn J.R., Matarese A.C., A review of the early life history of northeast Pacific gadoid fishes, Fish. Res., 1987, vol. 5, nos. 2–3, pp. 163–184. https://doi.org/10.1016/0165-7836(87)90038-5

    Article  Google Scholar 

  21. Excoffier, L. and Lischer, H.E.L., Arlequin suite ver. 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Mol. Ecol. Resour., 2010, vol. 10, no. 3, pp. 564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

    Article  PubMed  Google Scholar 

  22. Fadeev, N.S. and Vespestad, V., Overview of the pollock fishery, Izv. Tikhookean. Nauchno-Issled. Inst. Rybn. Khoz. Okeanogr., 2001, vol. 128, pp. 75–91.

    Google Scholar 

  23. Glubokov, A.I. and Kotenev, B.N., Populyatsionnaya struktura mintaya Theragra chalcogramma severnoi chasti Beringova morya (Population Structure of Alaska Pollock Theragra chalcogramma in the Northern Part of the Bering Sea), Moscow: VNIRO, 2006.

  24. Glubokovskii, M.K., Evolyutsionnaya biologiya lososevykh ryb (Evolutionary Biology of Salmon Fishes), Moscow: Nauka, 1995.

  25. Grant, W.S., Status and trends in genetic resources of capture fisheries, Proc. Workshop on Status and Trends in Aquatic Genetic Resources: a Basis for International Policy, Victoria, BC, 2006, vol. 8, p. 29.

  26. Grant, W.S. and Utter, F.M., Biochemical genetic variation in walleye pollock, Theragra chalcogramma: population structure in the southeastern Bering Sea and the Gulf of Alaska, Can. J. Fish. Aquat. Sci., 1980, vol. 37, no. 7, pp. 1093–1100. https://doi.org/10.1139/f80-142

  27. Gray, M.M., Granka, J.M., Bustamante, C.D., et al., Linkage disequilibrium and demographic history of wild and domestic Canids, Genetics, 2009, vol. 181, pp. 1493–1505.https://doi.org/10.1534/genetics.108.098830

  28. Kichara, K. and Shimada, A.M., Prey–predator interactions of walleye pollock Theragra chalcogramma and water temperature, Bull. Jpn. Soc. Sci. Fish., 1988, vol. 54, no. 7, pp. 1131–1135. https://doi.org/10.2331/suisan.54.1131

    Article  Google Scholar 

  29. Klyashtorin, L.B. and Lyubushin, A.A., Tsiklicheskie izmeneniya klimata i ryboproduktivnosti (Cyclic Changes of Climate and Fish Productivity), Moscow: VNIRO, 2005.

  30. Lapinskii, A.G., Prikoki, O.V., and Gorbachev, V.V., Calculation of gene flow for walleye pollock (Theragra chalcogramma) from the Sea of Okhotsk based on the data on the variability of the Nd2 and Cytb regions and the control region of mitochondrial DNA, Vestn. Sev.-Vost. Nauchn. Tsentra, Dal’nevost. Otd., Ross. Akad. Nauk, 2015, no. 1, pp. 77–80.

  31. Librado, P. and Rozas, J., DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 2009, vol. 25, no. 11, pp. 1451–1452. https://doi.org/10.1093/bioinformatics/btp187

    Article  CAS  PubMed  Google Scholar 

  32. Lee, W.J., Conroy, J., Howell, W.H., and Kocher, T.D., Structure and evolution of teleost mitochondrial control region, J. Mol. Evol., 1995, vol. 41, pp. 54–66. https://doi.org/10.1007/BF00174041

    Article  CAS  PubMed  Google Scholar 

  33. Livingston, P.A., Importance of predation by groundfish, marine mammals and birds on walleye pollock Theragra chalcogramma and Pacific herring Clupea pallasi in the eastern Bering Sea, Mar. Ecol.: Prog. Ser., 1993, vol. 102, no. 3, pp. 205–215. https://doi.org/10.3354/meps102205

    Article  Google Scholar 

  34. Lyle, M., Barron, J., Bralower, T.J., et al., Pacific Ocean and Cenozoic evolution of climate, Rev. Geophys., 2008, vol. 46, p. RG2002. https://doi.org/10.1029/2005RG000190

    Article  CAS  Google Scholar 

  35. Maeda, T., Fishing grounds of the Alaska pollock, Bull. Jpn. Soc. Sci. Fish., 1972, vol. 38, no. 4, pp. 362–371.

    Article  Google Scholar 

  36. Makhrov, A.A. and Lajus, D.L., Postglacial colonization of the North European seas by Pacific fishes and lamprey, Contemp. Probl. Ecol., 2018, vol. 11, no. 3, pp. 247–258. https://doi.org/10.1134/S1995425518030071

    Article  Google Scholar 

  37. Mecklenburg, C.W., Lynghammar, A., Johannesen, E., et al., Marine Fishes of the Arctic Region, in 2 vols., Akureyri: CAFF, 2018.

  38. Naumenko, N.I., Biologiya i promysel morskikh sel’dei Dal’nego Vostoka (Biology and Fishery of Marine Herrings of the Far East), Petropavlovsk-Kamchatski: Kamchat. Pechat. Dvor, 2001.

  39. Nof, D. and van Gorder, S., Did an open Panama Isthmus correspond to an invasion of Pacific water into the Atlantic? J. Phys. Oceanogr., 2003, vol. 33, no. 7, pp. 1324–1336. https://doi.org/10.1175/1520-0485(2003)033<1324:DAOPIC>2.0.CO;2

    Article  Google Scholar 

  40. Okazaki, T., Stevenson, D.E., Kai, Y., et al., Genetic population structure and demographic history of a pelagic lumpsucker, Aptocyclus ventricosus, Environ. Biol. Fish., 2020, vol. 103, pp. 283–289. https://doi.org/10.1007/s10641-020-00955-y

    Article  Google Scholar 

  41. O’Reilly, P.T., Canino, M.F., Bailey, K.M., and Bentzen, P., Inverse relationship between FST and microsatellite polymorphism in the marine fish, walleye pollock (Theragra chalcogramma): implications for resolving weak population structure, Mol. Ecol., 2004, vol. 13, no. 7, pp. 1799–1814. https://doi.org/10.1111/j.1365-294X.2004.02214.x

    Article  CAS  PubMed  Google Scholar 

  42. Orlov, A.M., Benzik, A.N., Vedishcheva, E.V., et al., Fishery studies in the Chukchi Sea on R/V Professor Levanidov in August 2019: the preliminary results, Tr. VNIRO, 2019, vol. 178, pp. 206–220. https://doi.org/10.36038/2307-3497-2019-178-206-220

    Article  Google Scholar 

  43. Orlov, A.M., Savin, A.B., Gorbatenko, K.M., et al., Biological srudies in the Russian Far Eastern and Arctic seas in the VNIRO Transarctic expedition, Tr. VNIRO, 2020a, vol. 181, pp. 102–143. https://doi.org/10.36038/2307-3497-2020-181-102-143

    Article  Google Scholar 

  44. Orlov, A.M., Rabazanov, N.I., and Nikiforov, A.I., Transoceanic migrations of fishlike animals and fish: norm or exclusion? J. Ichthyol., 2020b, vol. 60, no. 2, pp. 242–262. https://doi.org/10.1134/S0032945220020125

    Article  Google Scholar 

  45. Orlov, A.M., Gorbatenko, K.M., Benzik, A.N., et al., Biological research in the Siberian Arctic seas in summer–autumn 2019 (cruise of the R/V Professor Levanidov), Oceanology, 2021a, vol. 61, no. 2, pp. 295–296. https://doi.org/10.1134/S0001437021020156

  46. Orlov, A.M., Rybakov, M.O., Vedishcheva, E.V., et al., Walleye pollock Gadus chalcogrammus (Pallas, 1814), a species with continuous range from Norwegian Sea to Korea, Japan, and California: new records from Siberian Arctic, J. Mar. Sci. Eng., 2021b, vol. 9, no. 10, art. ID 1141. https://doi.org/10.3390/jmse9101141

    Article  Google Scholar 

  47. Orlova, S.Y., Smirnova, M.A., Stroganov, A.N., et al., Population structure and microevolution of Pacific cod Gadus macrocephalus based on the analysis of the control region (mtDNA) polymorphism, Russ. J. Genet., 2019, vol. 55, no. 5, pp. 580–591. https://doi.org/10.1134/S1022795419040100

    Article  CAS  Google Scholar 

  48. Palumbi, S.R., Using genetics as an indirect estimator of larval dispersal, in Ecology of Marine Invertebrate Larvae, Boca Raton, FL: CRC Press, 1995, pp. 369–388.

    Google Scholar 

  49. Pushnikov, V.V., Results of marking of pollock from the Sea of Okhotsk, in Populyatsionnaya struktura, dinamika chislennosti i ekologiya mintaya (Population Structure, Population Dynamics, and Ecology of Pollock), Vladivostok: Tikhookean. Nauchno-Issled. Inst. Rybn. Khoz. Okeanogr., 1987, pp. 202–208.

  50. Rambaut, A., Drummond, A.J., Xie, D., et al., Posterior summarization in Bayesian phylogenetics using Tracer 1.7, Syst. Biol., 2018, vol. 67, no. 5, pp. 901–904. https://doi.org/10.1093/sysbio/syy032

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  51. Savenkov, V.V., Shpigal’skaya, N.Yu., Varkentin, A.I., et al., Differentiation of the walleye pollock (Theragra chalcogramma) from the Sea of Okhotsk by microsatellite loci, Issled. Vodn. Biol. Resur. Kamchat. Sev.-Zap. Chasti Tikhogo Okeana, 2018, no. 48, pp. 5–18. https://doi.org/10.15853/2072-8212.2018.48.5-18

  52. Serobaba, I.I., The data on population structure of the walleye pollock Theragra chalcogramma (Pallas) from the Bering Sea, Vopr. Ikhtiol., 1977, vol. 17, no. 2 (103), pp. 247–260.

  53. Shanks, A.L., Pelagic larval duration and dispersal distance revisited, Biol. Bull. (Chicago), 2009, vol. 216, no. 3, pp. 373–385. https://doi.org/10.1086/BBLv216n3p373

    Article  Google Scholar 

  54. Shevchenko, V.V. and Datskiy, A.V., Bioekonomika ispol’zovaniya promyslovykh resursov mintaya Severnoi Patsifiki (Bioeconomy of Use of Commercial Pollock Resources in the North Pacific), Moscow: VNIRO, 2014.

  55. Shields, G.F. and Gust, J.R., Lack of geographic structure in mitochondrial DNA sequences of Bering Sea walleye pollock, Theragra chalcogramma, Mol. Mar. Biol. Biotechnol., 1995, vol. 4, no. 1, pp. 69–82.

    CAS  PubMed  Google Scholar 

  56. Shubina, E.A., Ponomareva, E.V., and Glubokov, A.I., Population genetic structure of walleye pollock Theragra chalcogramma (Gadidae, Pisces) from the Bering Sea and Sea of Okhotsk, Mol. Biol., 2009, vol. 43, no. 5, pp. 855–866. https://doi.org/10.1134/S0026893309050161

    Article  CAS  Google Scholar 

  57. Shuntov, V.P., Volkov, A.F., Temnykh, O.S., and Dulepova, E.P., Mintai v ekosistemakh dal’nevostochnykh morei (Pollock in the Ecosystems of the Far Eastern Seas), Vladivostok: Tikhookean. Nauchno-Issled. Inst. Rybn. Khoz. Okeanogr., 1993.

  58. Silva, W.A., Costa, M.C.R., Jr., Valente, V., et al., PCR template preparation for capillary DNA sequencing, BioTechniques, 2001, vol. 30, no. 3, pp. 537–540. https://doi.org/10.2144/01303st05

    Article  CAS  PubMed  Google Scholar 

  59. Villesen, P., FaBox: an online toolbox for FASTA sequences, Mol. Ecol. Notes, 2007, vol. 7, no. 6, pp. 965–968. https://doi.org/10.1111/j.1471-8286.2007.01821.x

    Article  CAS  Google Scholar 

  60. Vinnikov, A.V., Pacific cod (Gadus macrocephalus) of the Western Bering Sea, in Ecology of the Bering Sea: A Review of Russian Literature. Alaska Sea Grant College Program Report No. 96-01, Fairbanks: Univ. of Alaska, 1996, pp. 183–202.

  61. Wespestad, V.G., The status of Bering Sea pollock and the effect of the “Donut Hole” fishery, Fisheries, 1993, vol. 18, no. 3, pp. 18–24. https://doi.org/10.1577/1548-8446(1993)018<0018:TSO-BSP>2.0.CO;2

    Article  Google Scholar 

  62. White, C., Selkoe, K.A., Watson, J., et al., Ocean currents help explain population genetic structure, Proc. R. Soc. B, 2010, vol. 277, pp. 1685–1694. https://doi.org/10.1098/rspb.2009.2214

    Article  PubMed  PubMed Central  Google Scholar 

  63. Yanagimoto, T., Kitamura, T., and Kobayashi, T., Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma, Fish. Sci., 2004, vol. 70, no. 5, pp. 885–895. https://doi.org/10.1111/j.1444-2906.2004.00883.x

    Article  CAS  Google Scholar 

  64. Zverkova, L.M., Intraspecific structure of pollock in the Sea of Okhotsk, in Ekologiya, zapasy i promysel mintaya (Ecology, Stocks, and Fishing of Pollock), Vladivostok: Tikhookean. Nauchno-Issled. Inst. Rybn. Khoz. Okeanogr., 1981, pp. 41–56.

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ACKNOWLEGMENTS

The authors are grateful to all colleagues for the provided walleye pollock tissue samples used in this study. The authors express their sincere gratitude to late V.K. Babayan (VNIRO) for the calculations of different options for the total allowable catches of walleye pollock in the Sea of Okhotsk depending on the number of management units. The authors are also grateful to three anonymous referees, whose remarks and comments allowed significantly improve the article.

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Orlova, S.Y., Sergeev, A.A., Shcepetov, D.M. et al. Polymorphism of Walleye Pollock Gadus chalcogrammus Mitochondrial DNA Control Region in the Asiatic Part of the Range and its Phylogeographic History. J. Ichthyol. 62, 266–279 (2022). https://doi.org/10.1134/S0032945222020126

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