Abstract
In this study, a total of seventeen (17) waterborne, biofilm-producing isolates of Escherichia coli were used. The population analysis showed that biofilm consortia harbour three different phenotypes e.g. smooth surface phenotypes (SSP), rough surface phenotypes (RSP) and small colony variants (SCVs). The SSP was hydrophilic and the initiator of biofilm formation processes in response to environmental stress. The RSP exhibited hydrophobic properties and occupy the core of biofilm consortia. They were slow-growing and produced a high quantity of exopolysaccharides as compared to SSP and SCVs. The highly adhesive and hydrophobic SCVs appeared after 48 h of incubation and occupy the lower base of biofilm consortia. They were metabolically inactive and difficult to disperse after adhesion. Our experiments show that all the subject isolates of E. coli carry wcaF and flu gene. Besides, the comparative analysis showed that wcaF and flu gene expression was high in RSP. These phenotypes activate wcaF and flu genes to produce extracellular matrix material to persist in biofilm consortium. Comparative analysis showed the biofilm formation was initiated by SSP while the RSP and SCVs was a product of a cruel environment and has a major role in the stability and persistence of consortia.
Similar content being viewed by others
REFERENCES
Allegrucci, M. and Sauer K., Characterization of colony morphology variants isolated from Streptococcus pneumonia biofilm, J. Bacteriol., 2007, vol. 189, no. 5, pp. 2030–2038. https://doi.org/10.1128/JB.01369-06
Brooks, A.N., Turkarslan, S., Beer, K.D., Lo, F.Y., and Baliga, N.S., Adaptation of cells to new environments, Wiley Interdiscip. Rev. Sys. Biol. Med., 2011, vol. 3, no. 5, pp. 544–561. https://doi.org/10.1002/wsbm.136
Chen, C.Y., Nace, G.W., and Irwin, P.L., A 6 × 6 drop plate method for simultaneous colony counting and MPN enumeration of Campylobacter jejuni, Listeria monocytogenes, and Escherichia coli, J Microbiol. Methods, 2003, vol. 55, no. 2, pp. 475–479. https://doi.org/10.1016/S0167-7012(03)00194-5
Colwell, C.A., Small colony variants of Escherichia coli, J. Bacteriol., 1946, vol. 52, pp. 417–422.
Davey, M.E., and O’toole, G.A., Microbial biofilms: from ecology to molecular genetics, Microbiol. Mol Biol. Rev., 2000, vol. 64, no. 4, pp. 847–867. https://doi.org/10.1128/MMBR.64.4.847-867.2000
Déziel, E., Comeau, Y., and Villemur, R., Initiation of biofilm formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilities, J. Bacteriol., 2001, vol. 183, no. 4, pp. 1195–1204 https://doi.org/10.1128/JB.183.4.1195-1204.2001
Häußler, S., Ziegler, I., Löttel, A., Götz, F.V., Rohde, M., Wehmhöhner, D., Saravanamuthu, S., Tümmler, B., and Steinmetz, I., Highly adherent small-colony variants of Pseudomonas aeruginosa in cystic fibrosis lung infection, J. Med. Microbiol., 2003, vol. 52, no. 4, pp. 295−301. https://doi.org/10.1099/jmm.0.05069-0
Hutchison, J., Kaushik, K., Rodesney, C., Lilieholm, T., Bakhtiari, L., and Gordon, V.D., Increased production of the extracellular polysaccharide Psl can give a growth advantage to Pseudomonas aeruginosa in low-iron conditions, BioRxiv, 2018, p. 355339. https://doi.org/10.1101/355339
Ito, A., May, T., Kawata, K., and Okabe S., Significance of rpoS during maturation of Escherichia coli biofilms, Biotechnol. Bioeng., 2008, vol. 99, no. 6, pp. 1462–1471. https://doi.org/10.1002/bit.21695
Jacobsen, S.M., Stickler, D.J., Mobley, H.L., and Shirtliff, M.E., Complicated catheter-associated urinary tract infections due to Escherichia coli and Proteus mirabilis, Clin. Microbiol. Rev., 2008, vol. 21, no. 1, pp. 26–59. https://doi.org/10.1128/CMR.00019-07
Johns, B.E., Purdy, K.J., Tucker, N.P., and Maddocks, S.E., Phenotypic and genotypic characteristics of small colony variants and their role in chronic infection, Microbiol. Insights, 2015, vol. 8, p. MBI-S25800. https://doi.org/10.4137/MBI.S25800.
Kamada, N., Chen, G.Y., Inohara, N., and Nunez, G., Control of pathogens and pathobionts by the gut microbiota, Nat. Immunol., 2013, vol. 14, no. 4, pp. 685–690. https://doi.org/10.1038/ni.2608
Keren, I., Kaldalu, N., Spoering, A., Wang, Y., and Lewis, K., Persister cells and tolerance to antimicrobials, FEMS Microbiol. Lett., 2004, vol. 230, no. 1, pp. 13–18. https://doi.org/10.1016/S0378-1097(03)00856-5
Khelissa, S.O., Abdallah, M., Jama, C., Faille, C., and Chihib, N.E., Bacterial contamination and biofilm formation on abiotic surfaces and strategies to overcome their persistence, J. Mater. Environ. Sci., 2017, vol. 8, pp. 3326–3346.
Kouidhi, B., Zmantar, T., Hentati, H., and Bakhrouf, A., Cell surface hydrophobicity, biofilm formation, adhesives properties and molecular detection of adhesins genes in Staphylococcus aureus associated to dental caries, Microb. Pathog., 2010, vol. 49, nos. 1−2, pp. 14–22. https://doi.org/10.1016/j.micpath.2010.03.007
Krasowska, A. and Sigler, K., How microorganisms use hydrophobicity and what does this mean for human needs?, Front Cell Infect. Microbiol., 2014, vol. 4, p. 112. https://doi.org/10.3389/fcimb.2014.00112
Lee, J.H., Kim, Y.G., Gwon, G., Wood, T.K., and Lee, J., Halogenated indoles eradicate bacterial persister cells and biofilms, AMB Express, 2016, vol. 6, no. 1, p. 123. https://doi.org/10.1186/s13568-016-0297-6
Luidalepp, H., Jõers, A., Kaldalu, N., and Tenson T., Age of inoculum strongly influences persister frequency and can mask effects of mutations implicated in altered persistence, J. Bacteriol., 2011, vol. 193, no. 14, pp. 3598–3605.https://doi.org/10.1128/JB.00085-11
Marti, R., Schmid, M., Kulli, S., Schneeberger, K., Naskova, J., Knøchel, S., Ahrens, C.H., and Hummerjohann, J., Biofilm formation potential of heat resistant Escherichia coli dairy isolates and complete genome of MDR heat resistant strain FAM21845, Appl. Environ. Microbiol., 2017, vol. 83, no. 15, p. e00628-17.https://doi.org/10.1128/AEM.00628-17
Melter, O. and Radojevic, B., Small colony variants of Staphylococcus aureus, Folia Microbiol., 2010, vol. 55, no. 6, pp. 548–558. https://doi.org/10.1007/s12223-010-0089-3
Mirani, Z.A., Aziz, M., Khan, M.N., Lal, I., Hassan, N.U., and Khan S.I., Biofilm formation and dispersal of Staphylococcus aureus under the influence of oxacillin, Microb. Pathog., 2013, vol. 61, pp. 66–72. https://doi.org/10.1016/j.micpath.2013.05.002
Mirani, Z.A., Fatima, A., Urooj, S., Aziz, M., Khan, M.N., and Abbas, T., Relationship of cell surface hydrophobicity with biofilm formation and growth rate: a study on Pseudomonas aeruginosa, Staphylococcus aureus, and Escherichia coli, Iran J. Basic Med. Sci., 2018, vol. 21, no. 7, pp. 760–769. https://doi.org/10.22038/IJBMS.2018.28525.6917
Muyzer, G., De Waal, E.C., and Uitterlinden, A.G., Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 1993, vol. 59, no. 3, pp. 695–700.
Nicolas-Chanoine, M.H., Bertrand, X., and Madec, J.Y., Escherichia coli ST131, an intriguing clonal group, Clin. Microbiol. Rev., 2104, vol. 27, pp. 543–574. https://doi.org/10.1128/CMR.00125-13
Orazi, G. and O’toole, G.A., Pseudomonas aeruginosa alters Staphylococcus aureus sensitivity to vancomycin in a biofilm model of cystic fibrosis infection, MBio, 2017, vol. 8, no. 4, p. e00873-17. https://doi.org/10.1128/mBio.00873-17
O’Toole, G.A. and Kolter, R., Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis, Mol. Microbiol., 1998, vol. 28, no. 3, pp. 449–461. https://doi.org/10.1046/j.1365-2958.1998.00797.x
Petrova, O.E. and Sauer K., Escaping the biofilm in more than one way: desorption, detachment or dispersion, Curr. Opin. Microbiol., 2016, vol. 30, pp. 67–78. https://doi.org/10.1016/j.mib.2016.01.004
Qin, Z., Yang, Y., Qu, D., Molin, S., and Tolker-Nielsen, T., Pseudomonas aeruginosa extracellular products inhibit staphylococcal growth, and disrupt established biofilms produced by Staphylococcus epidermidis, Microbiology (UK), 2009, vol. 155, pp. 2148–2156. https://doi.org/10.1099/mic.0.028001-0
Schembri, M.A., Hjerrild, L., Gjermansen, M., and Klemm, P., Differential expression of the Escherichia coli autoaggregation factor antigen 43, J. Bacteriol., 2003, vol. 185, no. 7, pp. 2236–2242. https://doi.org/10.1128/JB.185.7.2236-2242.2003
Schiebel, J., Bohme, A., Nitschke, J., Burdukiewicz, M., Weinreich, J., Ali A., Roggenbuck, D., Rödiger, S., and Schierack, P., Genotypic and phenotypic characteristics associated with biofilm formation by human clinical Escherichia coli isolates of different pathotypes, Appl. Environ. Microbiol., 2017, vol. 83, no. 24, p. e01660-17. https://doi.org/10.1128/AEM .01660-17
Serra, D.O., Richter, A.M., and Hengge, R., Cellulose as an architectural element in spatially structured Escherichia coli biofilms, J. Bacteriol., 2013, vol. 195, no. 24, pp. 5540–5554. https://doi.org/10.1128/JB.00946-13
Shewaramani, S., Finn, T.J., Leahy, S.C., Kassen, R., Rainey, P.B., and Moon, C.D., Anaerobically grown Escherichia coli has an enhanced mutation rate and distinct mutational spectra, PLoS Genet., 2017, vol. 13, no. 1, p. e1006570. pmid:28103245. https://doi.org/10.1371/journal.pgen.1006570
Singh, R., Ray, P., Das, A., and Sharma, M., Role of persisters and small-colony variants in antibiotic resistance of planktonic and biofilm-associated Staphylococcus aureus: an in vitro study, J. Med. Microbiol., 2009, vol. 58, no. 8, pp. 1067–1073. https://doi.org/10.1099/jmm.0.009720-0
Solano, C., Garcia, B., Valle, J., Berasain, C., Ghigo, J.M., Gamazo, C., and Lasa, I., Genetic analysis of Salmonella enteritidis biofilm formation: critical role of cellulose, Mol. Microbiol., 2002, vol. 43, no. 3, pp. 793–808. https://doi.org/10.1046/j.1365-2958.2002.02802.x
Steenackers, H.P., Parijs, I., Foster, K.R., and Vanderleyden J., Experimental evolution in biofilm populations, FEMS Microbiol. Rev., 2016, vol. 40, no. 3, pp. 373–397. https://doi.org/10.1093/femsre/fuw002
Stewart, P.S., and Franklin, M.J., Physiological heterogeneity in biofilms, Nat. Rev. Microbiol. 2008, vol. 6, no. 3, pp. 199–210. https://doi.org/10.1038/nrmicro1838
Tashiro, Y., Eida, H., Ishii, S., Futamata, H., and Okabe, S., Generation of small colony variants in biofilms by Escherichia coli harboring a conjugative F plasmid, Microbes Environ. 2017, pp. 40–46. https://doi.org/10.1264/jsme2.ME16121
Uhlich, G.A., Cook, P.H., and Solomon, E.B., Analyses of the red-dry-rough phenotype of an Escherichia coli O157:H7 strain and its role in biofilm formation and resistance to antibacterial agents, Appl. Environ. Microbiol., 2006, vol. 72, no. 4, pp. 2564–2572. https://doi.org/10.1128/AEM.72.4.2564-2572.2006
Ulett, G.C., Valle, J., Beloin, C., Sherlock, O., Ghigo, J.M., and Schembri, M.A., Functional analysis of antigen 43 in uropathogenic Escherichia coli reveals a role in long term persistence in the urinary tract, Infect. Immun., 2007, vol. 75, pp. 3233–3244. https://doi.org/10.1128/IAI.01952-06
Van Meervenne, E., De Weirdt, R., Van Coillie, E., Devlieghere F., Herman, L., and Boon, N., Biofilm models for the food industry: hot spots for plasmid transfer?, Pathog. Dis., 2014, vol. 70, no. 3, pp. 332–338. https://doi.org/10.1111/2049-632X.12134
Vila, J., Sáez-López, E., Johnson, J.R., Römling, U., Dobrindt, U., Cantón, R., Giske, C.G., Naas, T., Carattoli, A., Martínez-Medina, M., and Bosch, J., Escherichia coli: an old friend with new tidings. FEMS Microbiol. Rev., 2016, vol. 40, pp. 437–463. https://doi.org/10.1093/femsre/fuw005
Vlamakis, H., Aguilar, C., Losick, R., and Kolter, R., Control of cell fate by the formation of an architecturally complex bacterial community, Gene Dev., 2008, vol. 22, no. 7, pp. 945–953. https://doi.org/10.1101/gad.1645008
Walker, S.L., Redman, J.A., and Elimelech, M., Role of cell surface lipopolysaccharides in Escherichia coli K12 adhesion and transport, Langmuir, 2004, vol. 20, no. 18, pp. 7736–7746. https://doi.org/10.1021/la049511f
Yang, S.C., Lin, C.H., Aljuffali, I.A., and Fang, J.Y., Current pathogenic Escherichia coli foodborne outbreak cases and therapy development, Arch Microbiol., 2017, vol. 199, no. 6, pp. 811–825. https://doi.org/10.1007/s00203-017-1393-y
Zhang, J. and Poh, C.L., Regulating exopolysaccharide gene wcaF allows control of Escherichia coli biofilm formation, Sci. Rep., 2018, vol. 8, no. 1, pp. 1–11. https://doi.org/10.1038/s41598-018-31161-7
Zogaj, X., Nimtz, M., Rohde, M., Bokranz, W., and Römling, U., The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix, Mol. Microbiol., 2001, vol. 39, no. 6, pp. 1452–1463. https://doi.org/10.1046/j.1365-2958.2001.02337.x
ACKNOWLEDGMENTS
We are thankful to Mr. Yousf Khan, Laboratory Engineer, Central Research Laboratory, University of Karachi, for providing Scanning Electron Microscopy and RT-PCR facilities. We are also thankful to Molecular Laboratory of DOW University of Heath Science Karachi for providing technical support RT-PCR for this study.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
The authors declare that they have no conflict of interest. This article does not contain any studies involving animals or human participants performed by any of the authors.
Rights and permissions
About this article
Cite this article
Mirani, Z.A., Urooj, S., Ullah, A. et al. Phenotypic Heterogeneity in Biofilm Consortia of E. coli . Microbiology 90, 237–246 (2021). https://doi.org/10.1134/S0026261721020089
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0026261721020089