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Caenibaculum baiyandianus gen. nov., sp. nov., a New Bacterium Isolated from Sewage Sediment of Baiyangdian

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Abstract

An aerobic, gram-negative-staining, motile and rod-shaped bacterium, designated strain 3-BNT, was isolated from sewage sediment collected from Baiyangdian, located in Xiongan New Area of China. This heterotrophic bacterium grows on glucose, yeast extract and a limited range of defined organic acids including lactic and propionic acids. The major isoprenoid quinone is ubiquinone Q-8. Major polar lipids are phosphatidylethanolamine (PE), phosphatidylglycerol (PG), diphosphatidyl glycerol (DPG) and three unidentified glycolipids. The major fatty acids are C16:0 (30.9%), C18:1ω7c (18.3%), C17:0 cyclo (16.1%) and C14:0 (7.9%). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 3-BNT belongs to the family Burkholderiaceae, and its closest phylogenetic neighbors are members of the genera Burkholderia and Caballeronia. However, strain 3-BNT did not make a coherent clade with members of the currently recognized genera. Based on phylogenetic and chemotaxonomic characteristics of this bacterium, a novel genus and species, Caenibaculum baiyandianus gen. nov., sp. nov., is proposed. The type strain is 3-BNT (=ACCC 60082T=KCTC 62431T).

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REFERENCES

  1. Buck, J.D., Nonstaining (KOH) method for determination of gram reactions of marine bacteria, Appl. Environ. Microbiol., 1982, vol. 44, no. 4, pp. 992‒993.

    Article  CAS  Google Scholar 

  2. Chen, W.M., Xie, P.B., Young, C.C., and Sheu, S.Y., Formosimonas limnophila gen. nov., sp. nov., a new member of the family Burkholderiaceae isolated from a freshwater lake, Int. J. Syst. Evol. Microbiol., 2017, vol. 67, no. 1, pp. 17‒24.

    Article  CAS  Google Scholar 

  3. Dobritsa, A.P. and Samadpour, M., Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia,Int. J. Syst. Evol. Microbiol., 2016, vol. 66, no. 8, pp. 2836−2846.

    Article  CAS  Google Scholar 

  4. Felsenstein, J., Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 1985, vol. 39, no. 4, pp. 783‒791.

    Article  Google Scholar 

  5. Garrity, G.M., Bell, J.A., and Lilburn, T., List of new names and new combinations previously effectively, but not validly, published, Int. J. Syst. Evol. Microbiol., 2006, vol. 56, no. 1, pp. 1‒6.

    Article  Google Scholar 

  6. Gordon, R.E. and Mihm, J.M., A comparative study of some strains received as nocardiae, J. Bacteriol., 1957, vol. 73, no. 1, pp. 15‒27.

    Article  CAS  Google Scholar 

  7. Kim, S.J., Ahn, J.H., Weon, H.Y., Hong, S.B., Seok, S.J., and Kwon, S.W., Parasegetibacter terrae sp. nov., isolated from paddy soil and emended description of the genus Parasegetibacter,Int. J. Syst. Evol. Microbiol., 2015, vol. 65, no. 1, pp. 113‒116.

    Article  CAS  Google Scholar 

  8. Kumar, S., Stecher, G., and Tamura, K., MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets, Mol. Biol. Evol., 2016, vol. 33, no. 7, pp. 1870‒1874.

    Article  CAS  Google Scholar 

  9. List of new names and new combinations previously effectively, but not validly, published, Int. J. Syst. Evol. Microbiol., 2006, vol. 56, no. 1, pp. 1‒6.

  10. Mesbah, M., Premachandran, U., and Whitman, W.B., Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography, Int. J. Syst. Bacteriol., 1989, vol. 39, no. 2, pp. 159‒167.

    Article  CAS  Google Scholar 

  11. Minnikin, D.E., O’Donnell, A.G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J.H., An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids, J. Microbiol. Methods, 1984, vol. 2, no. 5, pp. 233‒241.

    Article  CAS  Google Scholar 

  12. Nguyen, T.M., Lee, H., and Kim, J., Selective isolation of actinobacteria showing antibacterial activity against Paenibacillus larvae from soil samples collected in South Korea, J. Apiculture, 2013, vol. 28, no. 4, pp. 265‒272.

    Google Scholar 

  13. Ohshima, S., Sato, Y., Fujimura, R., Takashima, Y., Hamada, M., Nishizawa, T., Narisawa, K., and Ohta, H., Mycoavidus cysteinexigens gen. nov., sp. nov., an endohyphal bacterium isolated from a soil isolate of the fungus Mortierella elongata,Int. J. Syst. Evol. Microbiol., 2016, vol. 66, no. 5, p. 2052.

    Article  CAS  Google Scholar 

  14. Saitou, N. and Nei, M., The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Bi-ol. Evol., 1987, vol. 4, no. 4, pp. 406‒425.

    CAS  Google Scholar 

  15. Sasser, M., Identification of bacteria by gas chromatography of cellular fatty acids, Midi Technical Note, 2001, vol. 101.

    Google Scholar 

  16. Sawana, A., Adeolu, M., and Gupta, R.S., Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species, Frontiers in Genetics, 2014, vol. 5, p. 429.

    Article  Google Scholar 

  17. Vandamme, P. and Eberl, L., Burkholderia, in Bergey’s Manual of Systematics of Archaea and Bacteria, 2018, pp. 1−45.

  18. Vaz-Moreira, I., Narciso-Da-Rocha, C., De, B.E., Vandamme, P., Silva Ferreira, A.C., Lobo-Da-Cunha, A., Nunes, O.C., and Manaia, C.M., Hydromonas duriensis gen. nov., sp. nov., isolated from freshwater, Int. J. Syst. Evol. Microbiol., 2015, vol. 65, no. 11, pp. 4134‒4139.

    Article  CAS  Google Scholar 

  19. Yoon, S.H., Ha, S.M., Kwon, S., Lim, J., Kim, Y., Seo, H., and Chun, J., Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies, Int. J. Syst. Evol. Microbiol., 2017, vol. 67, no. 5, pp. 1613‒1617.

    Article  CAS  Google Scholar 

  20. Zhang, X., Ren, K., Du, J., Liu, H., and Zhang, L., Glycomyces artemisiae sp. nov., an endophytic actinomycete isolated from the roots of Artemisia argyi,Int. J. Syst. Evol. Microbiol., 2014, vol. 64, no. 10, pp. 3492‒3495.

    Article  Google Scholar 

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Funding

This work was supported by the National Natural Science Foundation of China (grant no. 31270053), the Natural Science Foundation of Hebei Province, China C2014201141) and Key Bioengineering Discipline of Hebei Province (1050-5030023).

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Correspondence to L. Zhang or X. Zhang.

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AUTHOR CONTRIBUTION

Yuhui Wang wrote the manuscript; Yuhui Wang, TianTian, Xiaojin Li, Lingjie Tang, Yunqi Li, Jinhua Zhang and Hongpeng Wang performed research; Xiumin Zhang and Liping Zhang designed experiments; Xiumin Zhang and Liping analyzed data.

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Wang, Y., Tian, T., Li, X. et al. Caenibaculum baiyandianus gen. nov., sp. nov., a New Bacterium Isolated from Sewage Sediment of Baiyangdian. Microbiology 89, 122–128 (2020). https://doi.org/10.1134/S0026261720010166

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