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Virus abundance in alluvial-sod soil determined by direct epifluorescence microscopy

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References

  • Brum, J.R., Schenck, R.O., and Sullivan, M.B., Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses, ISME J., 2013, vol. 7, pp. 1738–1751.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dryukker, V.V. and Dutova, N.V., On a new trophic element in aquatic ecosystems, Izv. Irkutsk. Gos. Univ., Ser. Earth Sci., 2009, vol. 1, no. 1, pp. 48–58.

    Google Scholar 

  • Fancello, L., Trape, S., Robert, C., Boyer, M., Popgeorgiev, N., Raoult, D., and Desnues, C., Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara, ISME J., 2013, vol. 7, pp. 359–369.

    Article  CAS  PubMed  Google Scholar 

  • Gomez, P. and Buckling, A., Bacteria-phage antagonistic coevolution in soil, Science, 2011, vol. 159, pp. 349–357.

    Google Scholar 

  • Gonzales-Martin, C., Teigell-Perez, N., Lyles, M., Valladares, B., and Griffin, D.W., Epifluorescent direct counts of bacteria and viruses from topsoil of various desert dust storm regions, Res. Microbiol., 2013, vol. 81, pp. 17–21.

    Article  Google Scholar 

  • Helton, R.R., Liu, L., and Wommack, K.E., Assessment of factors influencing direct enumeration of viruses within estuarine sediments, Appl. Environ. Microbiol., 2006, vol. 72, pp. 4767–4774.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kimura, M., Jia, Z.J., Narayama, N., and Asakawa, S., Ecology of viruses in soil: Past, present and future perspectives, Soil Sci. Plant Nutr., 2008, vol. 54, pp. 1–32.

    Article  Google Scholar 

  • Kopylov, A.I., Role of viruses in the structure and functioning of microbial communities in freshwater ecosystems, J. Siber. Fed. Univ. Biol., 2013, vol. 6, no. 4, pp. 354–367.

    Google Scholar 

  • Lopez-Bueno, A., Tamames, J., Velazquez, D., Moya, A., Quesada, A., and Alcami, A., High diversity of the viral community from an Antarctic lake, Science, 2009, vol. 326, pp. 858–861.

    Article  CAS  PubMed  Google Scholar 

  • Lysak, L.V., Lapygina, E.V., Konova, I.A., and Zvyagintsev, D.G., Population density and taxonomic composition of bacterial nanoforms in soils of Russia, Euras. Soil Sci. (Moscow), vol. 43, no. 4, pp. 765–770.

  • Metody pochvennoi biokhimii i mikrobiologii (Methods in Soil Biochemistry and Microbiology), Zvyagintsev, D.G., Ed., Moscow: Mos. Gos. Univ., 1991.

  • Noble, R.T. and Fuhrman, J.A., Use of SYBR Green 1 for rapid epifluorescence counts of marine viruses and bacteria, Aquat. Microb. Ecol., 1998, vol. 14, pp. 113–118.

    Article  Google Scholar 

  • Reavy, B., Swanson, M.M., Cock, P.J.A., Dawson, L., Freitag, T.E., Singh, B.K., Torrance, L., Mushegian, A.R., and Taliansky, M., Distinct circular single-stranded DNA viruses exist in different soil types, Appl. Environ. Microbiol., 2015, vol. 81, pp. 3934–3945.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shestakov, S.V., How does the horizontal gene transfer in bacteria occur and than is it tied up, Ekol. Genet., 2013, vol. 5, no. 2, pp. 12–24.

    Google Scholar 

  • Srinivasiah, S., Bhavsar, J., Thapar, K., Liles, M., Schonefeld, T., and Wommack, K.E., Phages across the biosphere: contrasts of viruses in soil and aquatic environments, Res. Microbiol., 2008, vol. 332, pp. 106–109.

    Google Scholar 

  • Swanson, M.M., Fraser, G., Daniell, T.J., Torrance, L., Gregory, P.J., and Taliansky, M., Viruses in soil: morphological diversity and abundance in the rhizosphere, Ann. Appl. Biol., 2009, vol. 155, pp. 51–60.

    Article  Google Scholar 

  • Vranova, V., Rejsek, K., and Formanek P., Proteolytic activity in soil, Appl. Soil Ecol. 2013, vol. 70, pp. 23–32.

    Article  Google Scholar 

  • Weinbauer, M.G., Ecology of prokaryotic viruses, FEMS Microbiol. Rev., 2004, vol. 28, pp. 127–181.

    Article  CAS  PubMed  Google Scholar 

  • Williamson, K.E., Radosevich, M., and Wommack, K.E., Abundance and diversity of viruses in six Delaware soils, Appl. Environ. Microbiol., 2005, vol. 71, pp. 3119–3125.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Correspondence to E. V. Lapygina.

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Original Russian Text © E.V. Lapygina, L.V. Lysak, M.I. Moskvina, D.G. Zvyagintsev, 2016, published in Mikrobiologiya, 2016, Vol. 85, No. 6, pp. 748–751.

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Lapygina, E.V., Lysak, L.V., Moskvina, M.I. et al. Virus abundance in alluvial-sod soil determined by direct epifluorescence microscopy. Microbiology 85, 759–761 (2016). https://doi.org/10.1134/S0026261716060138

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  • DOI: https://doi.org/10.1134/S0026261716060138

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