Skip to main content
Log in

Microbial community of the bottom sediments of the brackish Lake Beloe (Transbaikal region)

  • Experimental Articles
  • Published:
Microbiology Aims and scope Submit manuscript

Abstract

Investigation of microbial taxonomic diversity and of the rates of microbial processes of production and decomposition of organic matter made it possible to establish considerable diversity and activity of the sulfur cycle microorganisms in the microbial community of upper sediment layer of Lake Beloe (pH 9.4, salinity 3.1 g/L). According to the results of pyrosequencing of the 16S rRNA gene, bacteria involved in H2 formation and oxidation were numerically predominant and highly diverse. The Hydrogenophaga spp. dominating in the community are aerobic or facultatively anaerobic chemoorganoand chemolithoautotrophs using hydrogen oxidation as the source of energy. They play an important role in the transitory zones of mixing of subterranean and surface water.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Tyson, G.W., Chapman, J., Hugenholtz, P., Allen, E.E., Ram, R.J., Richardson, P.M., Solovyev, V.V., Rubin, E.M., Rokhsar, D.S., and Banfield, J.F., Community structure and metabolism through reconstruction of microbial genomes from the environment, Nature, 2004, vol. 428, pp. 37–43.

    Article  CAS  PubMed  Google Scholar 

  2. Venter, J.C., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.A., Wu, D., Paulsen, I., Nelson, K.E., Nelson, W., Fouts, D.E., Levy, S., Knap, A.H., Lomas, M.W., Nealson, K., White, O., Peterson, J., Hoffman, J., Parsons, R., Baden-Tillson, H., Pfannkoch, C., Rogers, Y.H., and Smith, H.O., Environmental genome shotgun sequencing of the Sargasso Sea, Science, 2004, vol. 304, pp. 66–74.

    Article  CAS  PubMed  Google Scholar 

  3. Chistoserdova, L., Is metagenomics resolving identification of functions in microbial communities?, Microb. Biotechnol., 2013, vol. 7, pp. 1–4. doi: 10.1111/1751-7915.12077

    Article  PubMed Central  PubMed  Google Scholar 

  4. Grant, W.D., Alkaline environments and biodiversity, in Extremophiles, Gerday, E.C. and Glansdorff, N., Eds., Oxford, UK: UNESCO, Eolss, 2006. http://www.eolss.net/ebooks/sample%20chapters/c03/e6-73-05-01.pdf

    Google Scholar 

  5. Ballot, A., Krienitz, L., Kotut, K., Wiegand, C., Metcalf, J.S., Codd, G.A., and Pflugmacher, S., Cyanobacteria and cyanobacterial toxins in three alkaline Rift Valley lakes of Kenya-Lakes Bogoria, Nakuru and Elmenteita, J. Plankton Res., 2004, vol. 26, pp. 925–935.

    Article  CAS  Google Scholar 

  6. Gorlenko, V.M., Anoxygenic phototrophic bacteria from soda lakes, in Trudy Instituta mikrobiologii im. S.V. Vinogradskogo. Vyp. 14: Alkalofil’nye mikrobnye soobshchestva (Proc. Winogradsky Inst. Microbiol., no. 14. Alkaliphilic Microbial Communities), Moscow: Nauka, 2007, pp. 225–257.

    Google Scholar 

  7. Gerasimenko, L.M., Alkaliphilic oxygenic photosynthetic microorganisms, in Trudy Instituta mikrobiologii im. S.V. Vinogradskogo. Vyp. 14: Alkalofil’nye mikrobnye soobshchestva (Proc. Winogradsky Inst. Microbiol., no. 14. Alkaliphilic Microbial Communities), Moscow: Nauka, 2007, pp. 88–157.

    Google Scholar 

  8. Zhilina, T.N., Chemotrophic anaerobes from soda lake microbial communities, in Trudy Instituta mikrobiologii im. S.V. Vinogradskogo. Vyp. 14: Alkalofil’nye mikrobnye soobshchestva (Proc. Winogradsky Inst. Microbiol., no. 14. Alkaliphilic Microbial Communities), Moscow: Nauka, 2007, pp. 158–224.

    Google Scholar 

  9. Medova, H., Boldareva, E.N., Hrouzek, P., Borzenko, S.V., Namsaraev, Z.B., Gorlenko, V.M., Namsaraev, B.B., and Koblíek, M., High abundances of aerobic anoxygenic phototrophs in saline steppe z? lakes, FEMS Microbiol. Ecol., 2011, vol. 76, pp. 393–400.

    Article  CAS  PubMed  Google Scholar 

  10. Rees, H.C., Grant, W.D., Jones, B.E., and Heaphy, S., Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods, Extremophiles, 2004, vol. 8, pp. 63–71.

    Article  CAS  PubMed  Google Scholar 

  11. Sorokin, D.Y., Kuenen, J.G., and Muyzer, G., The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes, Front. Microbiol., 2011, vol. 2, pp. 1–16.

    Google Scholar 

  12. Lanzén, A., Simachew, A., Gessesse, A., Chmolowska, D., Jonassen, I., and Øvreås, L., Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of ethiopian soda lakes, PLoS One, 2013, vol. 8.I.8. e72577. doi: 10.1371/journal.pone.0072577

    Article  Google Scholar 

  13. Xiong, J., Liu, Y., Lin, X., Zhang, H., Zeng, J., Hou, J., Yang, Y., Yao, T., Knight, R., and Chu, H., Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau, Environ. Microbiol., 2012, vol. 14, pp. 2457–2466.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  14. Namsaraev, B.B. and Namsaraev, Z.B., Microbial processes of the carbon cycle and environmental conditions in the soda lakes of Transbaikalia and Mongolia, in Trudy Instituta mikrobiologii im. S.V. Vinogradskogo. Vyp. 14: Alkalofil’nye mikrobnye soobshchestva (Proc. Winogradsky Inst. Microbiol., no. 14. Alkaliphilic Microbial Communities), Moscow: Nauka, 2007, pp. 299–322.

    Google Scholar 

  15. Zaitseva, S.V., Abidueva, E.Yu., Buryukhaev, S.P., and Namsaraev, B.B., Factors controlling the activity of the microbial community of the alkaline lake Beloe (Transbaikal region), Microbiology (Moscow), 2012, vol. 81, no. 4, pp. 468–476.

    Article  CAS  Google Scholar 

  16. Egorova, D.V., Effect of environmental conditions on diversity of microbial communities in the Transbaikalia brackish lakes, Extended Abstract Cand. Sci. (Biol.) Dissertation, Ulan-Ude: Buryat. State Univ., 2013.

    Google Scholar 

  17. Li, J.Y., Li, B., Zhou, Y., Xu, J.F., and Zhao, J., A rapid DNA extraction method for PCR amplification from wetland soils, Lett. Appl. Microbiol., 2011, vol. 52, pp. 626–633.

    Article  CAS  PubMed  Google Scholar 

  18. Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., Lesniewski, R.A., Oakley, B.B., Parks, D.H., Robinson, C.J., Sahl, J.W., Stres, B., Thallinger, G.G., Van Horn, D.J., and Weber, C.F., Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol., 2009, vol. 75, pp. 7537–7541.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  19. Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., and Glöckner, F.O., The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res., 2013, vol. 41, pp. 590–596.

    Article  Google Scholar 

  20. Willems, A., Busse, J., Goor, M., Pot, B., Falsen, E., Jantzen, E., Hoste, B., Gillis, M., Kersters, K., Auling, G., and De Ley, J., Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and “Pseudomonas carboxydoflava”), and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis), Int. J. Syst. Bacteriol., 1989, vol. 39, pp. 319–333.

    Article  CAS  Google Scholar 

  21. Brazelton, W.J., Morrill, P.L., Szponar, N., and Schrenk, M.O., Bacterial communities associated with subsurface geochemical processes in continental serpentinite springs, Appl. Environ. Microbiol., 2013, vol. 79, pp. 3906–3916.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  22. Shino Suzuki., Ishii, S., Wu, A., Cheung, A., Tenney, A., Wanger, G., Kuenen, J.G., and Nealson, K.H., Microbial diversity in The Cedars, an ultrabasic, ultrareducing, and low salinity serpentinizing ecosystem, Proc. Natl. Acad. Sci. U. S. A., 2013, vol. 110, pp. 15336–15341. doi: 10.1073/pnas.1302426110

    Article  Google Scholar 

  23. Shino Suzuki, Kuenen, J.G., Schipper, K., Van der Velde, S., Ishii, S., Wu, A., Sorokin, D.Y., Tenney, A., Meng, X.Y., Morrill, P.L., Kamagata, Y., Muyzer, G., and Nealson, K.H., Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site, Nature Commun, 2014. 5:article 3900 http://www.nature.com/naturecommunications DOI: 10.1038/ncomms4900

    Google Scholar 

  24. Brazelton, W.J., Nelson, B., and Schrenk, M.O., Metagenomic evidence for H2 oxidation and H2 production by serpentinite-hosted subsurface microbial ñommunities, Front. Microbiol., 2012, vol. 2, p. 268. doi: 10.3389/fmicb.2011.00268

    PubMed Central  PubMed  Google Scholar 

  25. Zavarzin, G.A., Epicontinental soda lakes as probable relic biotopes of of terrestrial biota formation, Microbiology, 1993, vol. 62, p. 473.

    Google Scholar 

  26. Gorlenko, V.M., Namsaraev, B.B., Kulyrova, A.V., Zavarzina, D.G., and Zhilina, T.N., The activity of sulfate-reducing bacteria in bottom sediments of soda lakes of the Southeastern Transbaikal region, Microbiology (Moscow), 1999, vol. 68, pp. 580–586.

    CAS  Google Scholar 

  27. Sorokin, D.Y., Gorlenko, V.M., Namsaraev, B.B., Namsaraev, Z.B., Lysenko, A.M., Eshinimaev, B.T., Khmelenina, V.N., Trotsenko, Y.A., and Kuenen, J.G., Prokaryotic communities of the north-eastern Mongolian soda lakes, Hydrobiologia, 2004, vol. 522, pp. 235–248.

    Article  Google Scholar 

  28. Yamada, T., Sekiguchi, Y., Hanada, S., Imachi, H., Ohashi, A., Harada, H., and Kamagata, Y., Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi, Int. J. Syst. Evol. Microbiol., 2006, vol. 56, pp. 1331–1340.

    Article  CAS  PubMed  Google Scholar 

  29. Mesbah, N.M., Abou-El-Ela, S.H., and Wiegel, J., Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi an Natrun, Egypt, PLoS One, 2013, vol. 8 e72577. doi: 10.1371/journal.pone.0072577

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to S. V. Zaitseva.

Additional information

Original Russian Text © S.V. Zaitseva, E.Yu. Abidueva, B.B. Namsaraev, L. Wang, L. Wu, 2014, published in Mikrobiologiya, 2014, Vol. 83, No. 6, pp. 722–729.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zaitseva, S.V., Abidueva, E.Y., Namsaraev, B.B. et al. Microbial community of the bottom sediments of the brackish Lake Beloe (Transbaikal region). Microbiology 83, 861–868 (2014). https://doi.org/10.1134/S0026261714060216

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S0026261714060216

Keywords

Navigation