Abstract
Methanotrophs closely related to psychrotolerant members of the genera Methylobacter and Methylocella were identified in cultures enriched at 10°C from landfill cover soil samples collected in the period from April to November. Mesophilic methanotrophs of the genera Methylobacter and Methylosinus were found in cultures enriched at 20°C from the same cover soil samples. A thermotolerant methanotroph related to Methylocaldum gracile was identified in the culture enriched at 40°C from a sample collected in May (the temperature of the cover soil was 11.5–12.5°C). In addition to methanotrophs, methylobacteria of the genera Methylotenera and Methylovorus and members of the genera Verrucomicrobium, Pseudomonas, Pseudoxanthomonas, Dokdonella, Candidatus Protochlamydia, and Thiorhodospira were also identified in the enrichment cultures. A methanotroph closely related to the psychrotolerant species Methylobacter tundripaludum (98% sequence identity of 16S rRNA genes with the type strain SV96T) was isolated in pure culture. The introduction of a mixture of the methanotrophic enrichments, grown at 15°C, into the landfill cover soil resulted in a decrease in methane emission from the landfill surface in autumn (October, November). The inoculum used was demonstrated to contain methanotrophs closely related to Methylobacter tundripaludum SV96.
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References
Murrell, J.C., The aerobic methane oxidizing bacteria (methanotrophs), in Handbook of Hydrocarbon and Lipid Microbiology, Timmis, K.N., Ed., Berlin: Springer-Verlag, 2010, pp. 1953–1966.
Vorobev, A.V., Baani, M., Doronina, N.V., Brady, A.L., Liesack, W., Dunfield, P.F., and Dedysh, S.N., Methyloferula stellate gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase, Int. J. Syst. Evol. Microbiol., 2011, vol. 61, pp. 2456–2463.
Iguchi, H., Yurimoto, H., and Sakai, Y., Methylovulum miyakonense gen. nov., sp. nov., a type I methanotroph isolated from forest soil, Int. J. Syst. Evol. Microbiol., 2011, vol. 61, pp. 810–815.
Geymonat, E., Ferrando, L., and Tarlera, S.E., Methylogaea oryzae gen. nov., sp. nov., a mesophilic methanotroph isolated from a rice paddy field, Int. J. Syst. Evol. Microbiol., 2011, vol. 61, pp. 2568–2572.
Hirayama, H., Fuse, H., Abe, M., Miyazaki, M., Nakamura, T., Nunoura, T., Furushima, Y., Yamamoto, H., and Takai, K., Methylomarinum vadi gen. nov., sp. nov., a marine methanotroph isolated from two distinct marine environments in japan, Int. J. Syst. Evol. Microbiol., 2013, vol. 63, pp. 1073–1082.
Op den Camp, H.J.M., Islam, T., Stott, M.B., Harhangi, H.R., Hynes, A., Schouten, S., Jetten, M.S.M., Birkeland, N.-K., Pol, A., and Dunfield, P.F., Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia, Environ. Microbiol. Rep., 2009, vol. 1, pp. 293–306.
Kallistova, A.Yu., Glagolev, M.V., Shnyrev, N.A., Kevbrina, M.V., Nekrasova, V.K., Chistotin, M.V., Faustova, E.V., Serebryanaya, M.I., and Nozhevnikova, A.N., Methane emission from the landfill surface as dependent on the landfill age and the season, Zh. Ekol. Khim, 2006, vol. 15, no. 1, pp. 13–21.
Nozhevnikova, A.N., Kallistova, A.Yu., and Kevbrina, M.V., Methane emission and oxidation at a landfill: seasonal monitoring, in Trudy Instituta mikrobiologii im. S.N. Vinogradskogo RAN (Proceedings of Winogradsky Institute of Microbiology, RAS), Moscow: Nauka, 2006, vol. XIII, pp. 172–192.
Kallistova A.Yu., Kevbrina, M.V., Nekrasova, V.K., Shnyrev, N.A., Einola, J.-K.M., Kulomaa, M.S., Rintala, J.A., and Nozhevnikova, A.N., Enumeration of methanotrophic bacteria in the cover soil of an aged municipal landfill, Microb. Ecol., 2007, vol. 54, pp. 637–645.
Kallistova, A.Yu., Kevbrina, M.V., Nekrasova, V.K., Glagolev, M.V., Serebryanaya, M.I., and Nozhevnikova, A.N., Methane oxidation in landfill cover soil, Microbiology (Moscow), 2005, vol. 74, no. 5, pp. 608–614.
Stralis-Pavese, N., Sessitsch, A., Weilharter, A., Reichenauer, T., Riesing, J., Csontos, J., Murrell, J.C., and Bodrossy, L., Optimization of diagnostic microarray for application in analyzing landfill methanotroph communities under different plant covers, Environ. Microbiol., 2004, vol. 6, pp. 347–363.
Gebert, J., Stralis-Pavese, N., Alawi, M., and Bodrossy, L., Analysis of methanotrophic communities in landfill biofilters using diagnostic microarray, Environ Microbiol., 2008, vol. 10, pp. 1175–1188.
Gebert, J., Singh, B.K., Pan, Y., and Bodrossy, L., Activity and structure of methanotrophic communities in landfill cover soils, Environ. Microbiol. Rep., 2009, vol. 1, no. 5, pp. 414–423.
Chen, Y., Dumont, M.G., Cebron, A., and Murrell, J.C., Identification of active methanotrophs in a landfill cover soil through detection of expression of 16s rRNA and functional genes, Environ. Microbiol., 2007, vol. 9, pp. 2855–2869.
Cebron, A., Bodrossy, L., Chen, Y., Singer, A.C., Thompson, I.P., Prosser, J.I., and Murrell, J.C., Identity of active methanotrophs in landfill cover soil as revealed by DNA-stable isotope probing, FEMS Microbiol. Ecol., 2007, vol. 62, pp. 12–23.
Hery, M., Singer, A.C., Kumaresan, D., Bodrossy, L., Stralis-Pavese, N., Prosser, J.I., Thompson, I.P., and Murrell, J.C., Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil, Int. J. Syst. Evol. Microbiol., 2008, vol. 2, pp. 92–104.
Lin, B., Monreal, C.M., Tambong, J.T., Miguez, C.B., and Carrasco-Medina, L., Phylogenetic analysis of methanotrophic communities in cover soils of a landfill in Ontario, Can. J. Microbiol., 2009, vol. 55, pp. 1103–1112.
Kumaresan, D., Abell, G.C.J., Bodrossy, L., StralisPavese, N., and Murrell, J.C., Spatial and temporal diversity of methanotrophs in landfill cover soil are differentially related to soil abiotic factors, Environ. Microbiol. Rep., 2009, vol. 1, no. 5, pp. 398–407.
Ait-Benicho, S., Jugnia, L.-B., Greer, C.W., and Cabral, A.R., Methanotrophs and methanotrophic activity in engineered landfill biocovers, Waste Manag., 2009, vol. 29, pp. 2509–2517.
He, P., Yang, N., Fang, W., Lu, F., and Shao, L., Interaction and independence on methane oxidation of landfill cover soil among three impact factors: water, oxygen and ammonium, Front. Environ. Sci. Engin. China, 2011, vol. 5, no. 2, pp. 175–185.
Börjesson, G., Sund, I. and Svensson, B., Microbial oxidation of CH4 at different temperatures in landfill cover soils, FEMS Microbiol. Ecol., 2004, vol. 48, pp. 305–312.
Gal’chenko, V.F., Metanotrofnye bakterii (Methanotrophic Bacteria), Moscow: GEOS, 2001.
Pimenov, N.V., Kallistova, A.Yu., Rusanov, I.I., Yusupov, S.K., Montonen, L., Jurgens, G., Munster, U., Nozhevnikova, A.N., and Ivanov, M.V., Methane formation and oxidation in the meromictic oligotrophic Lake Gek-Gel (Azerbaijan), Microbiology (Moscow), 2010, vol. 79, no. 2, pp. 247–252.
Heuer, H., Krsek, M., Baker, P., Smalla, K., and Wellington, E.M.H., Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients, Appl. Environ. Microbiol., 1997, vol. 63, pp. 3233–3241.
Wise, M.G., McArthur, J.V., and Shimkets, L.J., Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis, Appl. Environ. Microbiol., 1999, vol. 65, pp. 4887–4897.
Jurgens, G., Glöckner, F.-O., Amann, R., Saano, A., Montonen, L., Likolammi, M., and Münster, U., Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization, FEMS Microbiol. Ecol., 2000, vol. 34, pp. 45–56.
Nozhevnikova, A.N., Lifshits, A.B., Lebedev, V.S., and Zavarzin, G.A., Emission of methane into the atmosphere from landfills in the former USSR, Chemosphere, 1993, vol. 26, pp. 401–417.
Wartiainen, I., Hestnes, A.G., McDonald, I.R., and Svenning, M.M., Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway (78° N), Int. J. Syst. Evol. Microbiol., 2006, vol. 56, pp. 109–113.
Dedysh, S.N. and Dunfield, P.F., Facultative methane oxidizers, in Handbook of Hydrocarbon and Lipid Microbiology, Timmis, K.N., Ed., Berlin: Springer-Verlag, 2010, pp. 1967–1976.
Kevbrina, M.V., Okhapkina, A.A., Akhlynin, D.S., Kravchenko, I.K., Nozhevnikova, A.N., and Gal’chenko, V.F., Growth of mesophilic methanotrophs at low temperatures, Microbiology (Moscow), 2001, vol. 70, no. 4, pp. 384–391.
Bodrossy, L., Holmes, E.M., Holmes, A.J., Kovacs, K.L., and Murrell, J.C., Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov., Arch. Microbiol., 1997, vol. 168, pp. 493–503.
Doronina, N.V., Trotsenko, Yu.A., Kolganova, T.V., Tourova, T.P., and Salkinoja-Salonen, M.S., Methylobacillus pratensis sp. nov., a novel non-pigmented, aerobic, obligately methylotrophic bacterium isolated from meadow grass, Int. J. Syst. Evol. Microbiol., 2004, vol. 54, pp. 1453–1457.
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Original Russian Text © A.Yu. Kallistova, L. Montonen, G. Jurgens, U. Münster, M.V. Kevbrina, A.N. Nozhevnikova, 2014, published in Mikrobiologiya, 2014, Vol. 83, No. 1, pp. 109–118.
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Kallistova, A.Y., Montonen, L., Jurgens, G. et al. Culturable psychrotolerant methanotrophic bacteria in landfill cover soil. Microbiology 82, 847–855 (2013). https://doi.org/10.1134/S0026261714010044
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DOI: https://doi.org/10.1134/S0026261714010044


