Abstract
Spin-forbidden CO binding to the iron–sulfur cluster-free hydrogenase (Hmd) is studied by the DFT calculation. The result shows that the surface of the triplet causes a PHmd–CO minimum and that 3,5MECP is the lowest energy path to PHmd–CO. It is found that this CO binding involves a low barrier of 0.931 kcal/mol because of the need to change from a bound triplet state to the Hmd quintet ground state.
References
P. M. Vignais, B. Billoud, and J. Meyer, FEMS Microbiol. Rev., 25, 455–501 (2001).
J. W. Peters, W. N. Lanzilotta, B. J. Lemon, and L. C. Seefeldt, Science, 282, No. 5395, 1853–1858 (1998).
S. Shima and R. K. Thauer, Chem. Rec., 7, 37–46 (2007).
S. Shima, O. Pilak, S. Vogt, M. Schick, M. S. Stagni, W. Meyer-Klaucke, E. Warkentin, R. K. Thauer, and U. Ermler, Science, 321, No. 5888, 572–575 (2008).
M. Korbas, S. Vogt, W. Meyer-Klaucke, E. Bill, E. Lyon, and S. J. Thauer Rudolf Shima, Biol. Chem., 281, 30804–30813 (2006).
E. J. Lyon, S. Shima, R. Boecher, R. K. Thauer, F. W. Grevels, E. Bill, W. Roseboom, and S. P. J. Albracht, J. Chem. Soc., 126, 14239–14248 (2004).
S. Shima, E. J. Lyon, R. K. Thauer, B. Mienert, and E. J. Bill, J. Am. Chem. Soc., 127, 10430–10435 (2005).
P. J. Steinbach, A. Ansari, J. Berendzen, and D. Braunstein, Biochemistry, 30, No. 16, 3988–4001 (1991).
J. N. Harvey and M. Aschi, J. Chem. Phys., 1, 5555–5563 (1999).
B. Maria, C.-M. José-Luis, J. C. Alexander, W. G. Michael, N. Jeremy, P. P. Harvey, L. R. Kate, S. Xue-Zhong, and T. Michael, J. Am. Chem. Soc., 131, No. 10, 3583–3592 (2009).
M. Filatov and S. Shaik, J. Phys. Chem. A, 102, No. 21, 3835–3846 (1998).
J. L. Carreon-Macedo and J. N. Harvey, J. Am. Chem. Soc., 126, 5789–5797 (2004).
M. J. Frisch, et al., Gaussian 03, revision C.02., Pittsburgh, PA, Gaussian, Inc. (2003).
X. Yang and M. B. Hall, J. Am. Chem. Soc., 130, No. 43, 14036/14037 (2008).
X. Yang and M. B. Hall, J. Am. Chem. Soc., 131, 10901–10908 (2009).
Y. Zhang, J. H. Mao, N. Godbout, and E. Oldfield, J. Am. Chem. Soc., 124, 13921–13930 (2000).
C. Rovira, K. Kunc, J. Hutter, P. Ballone, and M. Parrinello, J. Phys. Chem. A, 101, 8914–8925 (1997).
Y. Zhang, J. Mao, and E. Oldfield, J. Am. Chem. Soc., 124, 7829–7839 (2002).
J. N. Harvey, J. Am. Chem. Soc., 122, No. 49, 12401/12402 (2000).
Y. Zhang and E. Oldfield, J. Am. Chem. Soc., 126, No. 14, 4470/4471 (2004).
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Original Russian Text © 2017 G.-J. Zha.
The text was submitted by the authors in English. Zhurnal Strukturnoi Khimii, Vol. 58, No. 2, pp. 366–369, February–March, 2017.
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Zha, GJ. Spin-forbidden CO binding to iron–sulfur cluster-free hydrogenase: A density functional study. J Struct Chem 58, 349–352 (2017). https://doi.org/10.1134/S0022476617020160
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DOI: https://doi.org/10.1134/S0022476617020160