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Structure–reactivity relationship in bimolecular elimination reactions based on the condensed graph of a reaction

  • Structure of Organic Compounds: Calculations and Experiments
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Abstract

By means of a structural representation of the chemical reactivity as a condensed graph a model predicting rate constants of the bimolecular elimination reaction is derived for the first time. The model developed enables the prediction of rate constants of reactions proceeding in different solvents or water-organic mixtures at different temperatures. It demonstrates a good predictive performance: a mean square deviation of predicted values from experimental ones is less than 0.7 logarithmic units. An outlier analysis shows that prediction errors are mainly due to the imperfection of the training data containing unique reactions. The model is available for users at arsole.u-strasbg.fr.

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References

  1. M. Geballe, A. G. Skillman, A. Nicholls, et al., J. Comput.-Aided Mol. Des., 24, No. 4, 259 (2010).

    Article  CAS  Google Scholar 

  2. V. A. Pal`m, Usp. Khim., 30, No. 9, 1069 (1961).

    CAS  Google Scholar 

  3. A. Varnek and I. I. Baskin, Mol. Inf., 30, No. 1, 20 (2011).

    Article  CAS  Google Scholar 

  4. A. Varnek, D. Fourches, F. Hoonakker, et al., J. Comput.-Aided Mol. Des., 19, Nos. 9/10, 693 (2005).

    Article  CAS  Google Scholar 

  5. S. Fujita, J. Chem. Inf. Model., 26, No. 4, 205 (1986).

    Article  CAS  Google Scholar 

  6. T. I. Madzhidov, P. G. Polishchuk, R. I. Nugmanov, et al., Russ. J. Org. Chem., 50, No. 4, 459 (2014).

    Article  CAS  Google Scholar 

  7. R. I. Nugmanov, T. I. Madzhidov, G. R. Khaliullina, et al., J. Struct. Chem., 55, No. 6, 1026 (2014).

    Article  CAS  Google Scholar 

  8. F. Hoonakker, N. Lachiche, A. Varnek, et al., Int. J. Artif. Intell. Tools, 20, No. 2, 253 (2011).

    Article  Google Scholar 

  9. A. A. Kravtsov, P. V. Karpov, I. I. Baskin, et al., Dokl. Chem., 440, No. 2, 299 (2011).

    Article  CAS  Google Scholar 

  10. A. A. Kravtsov, P. V. Karpov, I. I. Baskin, et al., Dokl. Chem., 441, No. 1, 314 (2011).

    Article  CAS  Google Scholar 

  11. H. Drucker, C. J. C. Burges, L. Kaufman, A. Smola, and V. Vapnik, Support Vector Regression Machines, in: Advances in Neural Information Processing Systems, M. C. Mozer, J. I. Jordan, and J. I. Petsche (eds.), vol. 9, MIT Press (1997). p. 155.

    Google Scholar 

  12. D. Horvath, J. Brown, G. Marcou, et al., Challenges, 5, No. 2, 450 (2014).

    Article  Google Scholar 

  13. InstantJChem 15.7.27.0, ChemAxon (2015). http://wwwchemaxoncom.

  14. Standardizer, JChem 15.8.3.0, ChemAxon (2015). http://wwwchemaxoncom.

  15. G. Marcou, V. Solov'ev, D. Horvath, and A. Varnek, ISIDA Fragmentor2011-User Manual (2012).

    Google Scholar 

  16. J. Catalán, V. López, P. Pérez, et al., Liebigs Ann., 1995, No. 2, 241 (1995).

    Article  Google Scholar 

  17. J. Catalán and C. Díaz, Liebigs Ann., 1997, No. 9, 1941 (1997).

    Article  Google Scholar 

  18. J. Catalán, C. Díaz, V. López, et al., Liebigs Ann., 1996, No. 11, 1785 (1996).

    Article  Google Scholar 

  19. R. W. Taft and M. J. Kamlet, J. Am. Chem. Soc., 98, No. 10, 2886 (1976).

    Article  CAS  Google Scholar 

  20. M. J. Kamlet and R. W. Taft, J. Am. Chem. Soc., 98, No. 2, 377 (1976).

    Article  CAS  Google Scholar 

  21. M. J. Kamlet, J. L. Abboud, and R. W. Taft, J. Am. Chem. Soc., 99, No. 18, 6027 (1977).

    Article  CAS  Google Scholar 

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Correspondence to T. I. Madzhidov.

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Original Russian Text © 2015 T. I. Madzhidov, A. V. Bodrov, T. R. Gimadiev, R. I. Nugmanov, I. S. Antipin, and A. A. Varnek.

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Translated from Zhurnal Strukturnoi Khimii, Vol. 56, No. 7, pp. 1293-1300, November-December, 2015.

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Madzhidov, T.I., Bodrov, A.V., Gimadiev, T.R. et al. Structure–reactivity relationship in bimolecular elimination reactions based on the condensed graph of a reaction. J Struct Chem 56, 1227–1234 (2015). https://doi.org/10.1134/S002247661507001X

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  • DOI: https://doi.org/10.1134/S002247661507001X

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