Abstract
The results of systematic investigations devoted to the role of Drosophila melanogaster proteins SAYP and ENY2 in the regulation of different stages of gene expression are presented. Gene expression is a system of multistage processes involving preparation of the chromatin matrix, initiation of transcription, mRNA synthesis, as well as formation of mRNP particles, their export, and translation in the cytoplasm. Each of these stages involves a great number of factors presented usually by protein complexes consisting of different subunits. Analysis of the available evidence indicates that the transcription coactivators SAYP and ENY2 act in gene expression as cooperative nanoregulators, thereby determining the molecular mechanisms of coordination of the spatial and temporal characteristics of the processes implementing the genetic information.
Similar content being viewed by others
References
J. H. Brickner and P. Walter, PLoS Biol. 2(11), e342 (2004).
G. G. Cabal, A. Genovesio, S. Rodriguez-Navarro, et al., Nature 441(7094), 770 (2006).
J. M. Casolari, C. R. Brown, S. Komili, et al., Cell 117(4), 427 (2004).
M. Gaszner and G. Felsenfeld, Nat. Rev. Genet. 7(9), 703 (2006).
H. A. Wallace, M. P. Plata, H. J. Kang, et al., Chromosoma 119(2), 177 (2010).
D. J. Taatjes, M. T. Marr, and R. Tjian, Nat. Rev. Mol. Cell Biol. 5(5), 403 (2004).
A. M. Naar, B. D. Lemon, and R. Tjian, Annu. Rev. Biochem. 70, 475 (2001).
B. Lemon and R. Tjian, Genes Dev. 14(20), 2551 (2000).
K. E. Neely and J. L. Workman, Biochim. Biophys. Acta 1603(1), 19 (2002).
L. Mohrmann and C. P. Verrijzer, Biochim. Biophys. Acta 1681(2–3), 59 (2005).
S. P. Baker and P. A. Grant, Oncogene 26(37), 5329 (2007).
E. Koutelou, C. L. Hirsch, and S. Y. Dent, Curr. Opin. Cell Biol. 22(3), 374 (2010).
S. Rodriguez-Navarro, EMBO Rep. 10(8), 843 (2009).
B. D. Dynlacht, T. Hoey, and R. Tjian, Cell 66(3), 563 (1991).
S. Jimeno and A. Aguilera, J. Biol. 9(1), 6 (2010).
R. Luna, H. Gaillard, C. Gonzalez-Aguilera, and A. Aguilera, Chromosoma 117(4), 319 (2008).
J. Rehwinkel, A. Herold, K. Gari, et al., Nat. Struct. Mol. Biol. 11(6), 558 (2004).
P. Bjork and L. Wieslander, Chromosoma 120(1), 23 (2011).
A. Kohler and E. Hurt, Nat. Rev. Mol. Cell. Biol. 8(10), 761 (2007).
M. Stewart, Trends Biochem Sci. 35(11), 609 (2010).
P. G. Georgiev and T. I. Gerasimova, Genetika 25(8), 1409 (1989).
A. Soldatov, E. Nabirochkina, S. Georgieva, et al., Mol. Cell Biol. 19(5), 3769 (1999).
Y. V. Shidlovskii, A. N. Krasnov, J. N. Nikolenko, et al., EMBO J. 24(1), 97 (2005).
G. E. Chalkley, Y. M. Moshkin, K. Langenberg, et al., Mol. Cell. Biol. 28(9), 2920 (2008).
B. Y. Lu, P. C. Emtage, B. J. Duyf, et al., Genetics 155(2), 699 (2000).
L. Aravind and D. Landsman, Nucl. Acids Res. 26(19), 4413 (1998).
C. A. Musselman and T. G. Kutateladze, Mol. Interventions 9(6), 314 (2009).
R. Sanchez and M. M. Zhou, Trends Biochem. Sci. 36(7), 364 (2011).
S. S. Banga, L. Peng, T. Dasgupta, et al., Cytogen. Genome Res. 126(3), 227 (2009).
J. Lessard, J. I. Wu, J. A. Ranish, et al., Neuron 55(2), 201 (2007).
M. Wei, B. Liu, L. Su, et al., Mol. Cancer Therap. 9(6), 1764 (2010).
N. E. Vorobyeva, N. V. Soshnikova, J. L. Kuzmina, et al., Cell Cycle 8(14), 2152 (2009).
N. E. Vorobyeva, N. V. Soshnikova, J. V. Nikolenko, et al., Proc. Natl. Acad. Sci. USA 106(27), 11049 (2009).
J. D. Parvin and R. A. Young, Curr. Opinion Genetics & Development. 8(5), 565 (1998).
T. Nakamura, T. Mori, S. Tada, et al., Mol. Cell 10(5), 1119 (2002).
A. J. Saurin, Z. Shao, H. Erdjument-Bromage, et al., Nature 412(6847), 655 (2001).
P. Muller, D. Kuttenkeuler, V. Gesellchen, et al., Nature 436(7052), 871 (2005).
K. Nybakken, S. A. Vokes, T. Y. Lin, et al., Nature Genetics 37(12), 1323 (2005).
N. E. Vorobyeva, J. V. Nikolenko, A. N. Krasnov, et al., Cell Cycle 10(11), 1821 (2011).
S. Georgieva, E. Nabirochkina, F. J. Dilworth, et al., Mol. Cell. Biol. 21(15), 5223 (2001).
S. Rodriguez-Navarro, T. Fischer, M. J. Luo, et al., Cell 116(1), 75 (2004).
P. Pascual-Garcia and S. Rodriguez-Navarro, RNA-Biol. 6(2) (2009).
Y. Zhao, G. Lang, S. Ito, et al., Mol. Cell. 29(1), 92 (2008).
Q. Lu, X. Tang, G. Tian, et al., Plant J. (2009).
A. N. Krasnov, M. M. Kurshakova, V. E. Ramensky, et al., Nucl. Acids Res. 33(20), 6654 (2005).
L. A. Lebedeva, E. N. Nabirochkina, M. M. Kurshakova, et al., Proc. Natl. Acad. Sci. USA 102(50), 18087 (2005).
I. F. Zhimulev, Adv. Genet. 39, 1 (1999).
D. V. Kopytova, A. V. Orlova, A. N. Krasnov, et al., Genes Dev. (in press).
P. Pascual-Garcia, C. K. Govind, E. Queralt, et al., Genes Dev. 22(20), 2811 (2008).
S. Chavez, T. Beilharz, A. G. Rondon, et al., EMBO J. 19(21), 5824 (2000).
S. Jimeno, A. G. Rondon, R. Luna, and A. Aguilera, EMBO J. 21(13), 3526 (2002).
K. Strasser, S. Masuda, P. Mason, et al., Nature 417(6886), 304 (2002).
H. Cheng, K. Dufu, C. S. Lee, et al., Cell. 127(7), 1389 (2006).
S. Masuda, R. Das, H. Cheng, et al., Genes Dev. 19(13), 1512 (2005).
J. Rehwinkel, A. Herold, K. Gari, et al., Nat. Struct. Mol. Biol. 11(6), 558 (2004).
C. Saguez, M. Schmid, J. R. Olesen, et al., Mol. Cell. 31(1), 91 (2008).
J. A. Chekanova, K. C. Abruzzi, M. Rosbash, and D. A. Belostotsky, RNA. 14(1), 66 (2008).
C. Gonzalez-Aguilera, C. Tous, B. Gomez-Gonzalez, et al., Mol. Biol. Cell. 19(10), 4310 (2008).
Author information
Authors and Affiliations
Additional information
Original Russian Text © A.V. Brechalov, D.Ya. Gurskii, S.G. Georgieva, Yu.V. Shidlovskii, 2011, published in Biofizika, 2011, Vol. 56, No. 5, pp. 831–839.
Rights and permissions
About this article
Cite this article
Brechalov, A.V., Gurskii, D.Y., Georgieva, S.G. et al. Functioning of macromolecular complexes at successive stages of gene expression as self-coordinated molecular machines. BIOPHYSICS 56, 803–809 (2011). https://doi.org/10.1134/S0006350911050034
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0006350911050034