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Modeling of asymmetric gene networks functioning with different types of regulation

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Abstract

We find conditions of existence of closed trajectories and describe their bifurcations for two broad classes of 3D asymmetric gene network models corresponding to two different regulation mechanisms. These results can be generalized to the case of gene networks of mixed types, where this regulation is effected either at the stages of initiation of mRNA and protein synthesis or at the stages of their degradation, and both different regulation mechanisms can appear in the same gene network. Description of the Andronov-Hopf bifurcation in these models is given as well.

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References

  1. V. A. Likhoshvai, Yu. G. Matushkin, and S. I. Fadeev, Mol. Biol. 35(6), 926 (2001).

    Article  Google Scholar 

  2. V. P. Golubyatnikov, V. A. Likhoshvai, S. I. Fadeev, et al., Proceedings of 6-th Int. Conf. Human and Computer-2003 University of Aizu, 200 (2003).

  3. V. P. Golubyatnikov, V. A. Likhoshvai, E. P. Volokitin, et al., in Bioinformatics of Genome Regulation and Structure II, Ed. by N. A. Kolchanov, R. Hofestaedt, and L. Milanesi (Springer Science + Business Media Inc.), 405 (2006).

  4. M. Golubitsky and I. Stewart, Bull. Amer. Math. Soc. 43(3), 305 (2006).

    Article  MATH  MathSciNet  Google Scholar 

  5. Y. Benenson, B. Gil, U. Ben-Dor, R. Adar, and E. Shapiro, Nature 429, 423 (2004).

    Article  ADS  Google Scholar 

  6. V. P. Golubyatnikov, V. A. Likhoshvai, Yu. A. Gaidov, A. G. Kleshchev, and E. A. Lashina, Proceedings of 8-th International Conf. “Human and Computers-2005” University of Aizu, Japan, 7 (2005).

    Google Scholar 

  7. V. P. Golubyatnikov, A. G. Kleshchev, K. A. Kleshcheva, and A. V. Kudryavtzeva, Siberian Journal of Industrial Mathematics 9(1), 75 (2006).

    Google Scholar 

  8. S. Hastings, J. Tyson, and D. Webster, J. Diff. Equations 25, 39 (1977).

    Article  MATH  MathSciNet  Google Scholar 

  9. E. P. Volokitin and S. A. Treskov, Siberian Journal of Industrial Mathematics 8(1), 30 (2005).

    MathSciNet  Google Scholar 

  10. M. Elowitz and S. Leibner, Nature 403, 335 (2000).

    Article  ADS  Google Scholar 

  11. T. Gardner, C. R. Cantor, and J. J. Collins, Nature 403, 339 (2000).

    Article  ADS  Google Scholar 

  12. N. Yildirim and M. C. Mackey, Biophys. J. 84, 2841 (2003).

    Article  ADS  Google Scholar 

  13. R. N. Tchuraev, I. V. Stupak, I. S. Tropkina, and E. E. Stupak, FEBS Lett. 486(3), 200 (2000).

    Article  Google Scholar 

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Correspondence to V. P. Golubyatnikov.

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Golubyatnikov, V.P., Gaidov, Y.A., Kleshchev, A.G. et al. Modeling of asymmetric gene networks functioning with different types of regulation. BIOPHYSICS 51 (Suppl 1), 61–65 (2006). https://doi.org/10.1134/S000635090607013X

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