Abstract
Self-assembly of soluble unlinked and cross-linked fibrin oligomers formed from desA-fibrin monomer under the influence of factor XIIIa was studied in the presence of non-denaturing urea concentrations. By methods of elastic and dynamic light scattering combined with analytical ultracentrifugation, desA-fibrin oligomers formed in both the presence and absence of the factor XIIIa were shown to be ensembles consisting of soluble rod-like double-stranded protofibrils with diverse weight and size. Unlinked and cross-linked soluble double-stranded protofibrils can reach the length of 350–450 nm. The structure of soluble covalently-linked protofibrils is stabilized by isopeptide γ-dimers. Electrophoretic data indicate a complete absence of isopeptide bonds between α-chains of desA-fibrin molecules. The molecular mechanism of formation of soluble rod-like fibrin structures and specific features of its covalent stabilization under the influence of factor XIIIa are discussed.
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Mosesson, M. W. (2005) J. Thromb. Haemost., 3, 1894–1904.
Blomback, B. (1996) Thromb. Res., 83, 1–75.
Weisel, J. W. (2005) Adv. Protein. Chem., 70, 247–299.
Marguerie, G., and Stuhrmann, H. B. (1976) J. Mol. Biol., 102, 143–156.
Medved, L., and Weisel, W. (2009) J. Thromb. Haemost., 7, 355–359.
Spraggon, G., Everse, S. J., and Doolittle, R. F. (1997) Nature, 389, 455–462.
Madrazo, J., Brown, J. H., Livinovich, S., Dominguez, R., Yakovlev, S., Medved, L., and Cohen, C. (2001) Proc. Natl. Acad. Sci. USA, 98, 11967–11972.
Brown, J. H., Volkman, N., Jun, G., Henschen-Edman, A. H., and Cohen, C. (2001) Proc. Natl. Acad. Sci. USA, 97, 85–90.
Yang, Z., Kollman, J. K., Pandi, L., and Doolittle, R. F. (2001) Biochemistry, 40, 12515–12523.
Budzynski, A. Z., Olexa, S. A., and Pandya, B. V. (1983) Ann. N. Y. Acad. Sci., 408, 301–314.
Yee, V. C., Pratt, K. P., Cote, H., Trong, I. L., Chung, D. W., Davie, E. W., Stencamp, R. E., and Teller, D. C. (1997) Structure, 5, 125–138.
Pratt, K. P., Cote, H., Chung, D. W., Stencamp, R. E., and Davie, E. W. (1997) Proc. Natl. Acad. Sci. USA, 94, 71–81.
Doolittle, R. F. (1984) Annu. Rev. Biochem., 53, 195–229.
Blomback, B., Hessel, B., Hogg, D., and Therkildsen, L. (1978) Nature, 257, 501–505.
Mihalyi, E. (1988) Biochemistry, 27, 967–976.
Rosenfeld, M. A., Gershkovich, K. B., Kuznetsov, D. V., Meshkov, B. B., and Gontar, I. D. (1986) Mol. Biol., 20, 1098–1110.
Rosenfeld, M. A., Gershkovich, K. B., and Kuznetsov, D. V. (1988) Mol. Biol., 22, 86–93.
Blomback, B., and Laurent, T. C. (1958) Ark. Kemi., 2, 137–146.
Lawrie, J. S., Ross, J., and Kemp, G. G. (1979) Biochem. Soc. Trans., 7, 693–694.
Lorand, L., Gredo, R. B., and Janus, T. J. (1981) Methods Enzymol., 809, 333–341.
Rosenfeld, M., and Vasileva, M. V. (1991) Biomed. Sci., 2, 155–161.
Svedsen, L., Blomback, B., Blomback, M., and Olsson, P. J. (1972) Tromb. Res., 3, 267–278.
Rosenfeld, M. A., Leonova, V. B., Shchegolikhin, A. N., Razumovskii, S. D., Konstantinova, M. L., Bychkova, A. V., and Kovarskii, A. L. (2010) Biochemistry (Moscow), 75, 1285–1293.
Shulman, S. (1953) J. Am. Chem. Soc., 75, 5846–5852.
Casassa, E. F. (1955) J. Chem. Phys., 23, 596–597.
Lugovskoi, E. V., Gritsenko, P. G., and Komissarenko, S. V. (2009) Bioorg. Khim., 35, 437–456.
Hogg, D. H., and Blomback, B. (1978) Thromb. Res., 12, 953–964.
Yang, Z., Mochalkin, I., and Doolittle, R. F. (2000) Proc. Natl. Acad. Sci. USA, 97, 14156–14161.
Weisel, J. W., Veclich, Y., and Gorkun, O. (1993) J. Mol. Biol., 232, 285–297.
Tsvetkov, V. N., Eskin, V. E., and Frenkel, S. Ya. (1964) Structure of Macromolecules in Solutions [in Russian], Nauka, Moscow, pp. 93–480.
Weisel, J. W., Francis, C. W., Nagaswani, C., and Marder, V. J. (1993) J. Biol. Chem., 268, 26618–26624.
Veklich, Y., Ang, E. K., Lorand, L., and Weisel, J. W. (1998) Proc. Natl. Acad. Sci. USA, 95, 1438–1442.
Doolittle, R. F. (2003) J. Thromb. Haemost., 1, 1559–1565.
Weisel, J. W. (2004) J. Thromb. Haemost., 2, 1467–1469.
Mosesson, M. W. (2004) J. Thromb. Haemost., 2, 388–393.
Krakow, Enders, G. F., Siegel, B. M., and Scheraga, H. A. (1972) J. Mol. Biol., 71, 95–103.
Williams, R. C. (1983) Ann. N. Y. Acad. Sci., 408, 180–193.
Gron, B., Filion-Myklebust, C., Bennick, A., Nieuwenhuizen, W., Matsueda, G. R., and Brosstad, F. (1992) Blood Coagul. Fibrinol., 3, 731–736.
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Original Russian Text © M. A. Rosenfeld, V. B. Leonova, M. I. Biryukova, M. V. Vasileva, 2011, published in Biokhimiya, 2011, Vol. 76, No. 10, pp. 1416–1427.
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Rosenfeld, M.A., Leonova, V.B., Biryukova, M.I. et al. Self-assembly of soluble unlinked and cross-linked fibrin oligomers. Biochemistry Moscow 76, 1155–1163 (2011). https://doi.org/10.1134/S0006297911100099
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DOI: https://doi.org/10.1134/S0006297911100099