Advertisement

Molecular Biology

, Volume 41, Issue 4, pp 670–673 | Cite as

The number of long hairpins in intergenic trailer regions of actinobacteria is far greater than in other genomic regions

  • E. V. Lyubetskaya
  • A. V. Seliverstov
  • V. A. Lyubetsky
Short Communications

Key words

DNA secondary structure gene expression 

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. 1.
    Washio T., Sasayama J., Tomita M. 1998. Analysis of complete genomes suggests that many prokaryotes do not rely on hairpin formation in transcription termination. Nucleic Acids Res. 26, 5456–5463.PubMedCrossRefGoogle Scholar
  2. 2.
    Unniraman S., Prakash R., Nagaraja V. 2002. Conserved economics of transcription termination in eubacteria. Nucleic Acids Res. 30, 675–684.PubMedCrossRefGoogle Scholar
  3. 3.
    Knorre D.G., Myzina S.D. 2003. Biologicheskaya khimiya (Biological Chemistry). Moscow: Vysshaya Shkola. p. 107.Google Scholar
  4. 4.
    Wadkins R.M. 2000. Targeting DNA secondary structures. Curr. Med. Chem. 7, 1–15.PubMedGoogle Scholar
  5. 5.
    Seliverstov A.V., Putzer H., Gelfand M.S., Lyubetsky V.A. 2005. Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria. BMC Microbiol. 5, 54.PubMedCrossRefGoogle Scholar
  6. 6.
    Vitreschak A.G., Lyubetskaya E.V., Shirshin M.A., Gelfand M.S., Lyubetsky V.A. 2004. Attenuation regulation of amino acid biosynthetic operons in proteobacteria: Comparative genomics analysis. FEMS Microbiol Lett. 234, 357–370.PubMedCrossRefGoogle Scholar
  7. 7.
    Ishchukov I.I., Likhoshvai V.A., Matushkin Yu.G. 2004. A new algorithm for recognizing the operon structure of procaryotes. Proc. 4th Int. Conf. on Bioinformatics of Genome Regulation and Structure, Novosibirsk: Inst. Tsitol. Genet., SO RAN, pp. 73–76.Google Scholar

Copyright information

© Pleiades Publishing, Inc. 2007

Authors and Affiliations

  • E. V. Lyubetskaya
    • 1
  • A. V. Seliverstov
    • 1
  • V. A. Lyubetsky
    • 1
  1. 1.Kharkevich Institute of Information Transmission ProblemsRussian Academy of SciencesMoscowRussia

Personalised recommendations