Abstract
Conventional agriculture has had major environmental impacts, in particular with respect to soil degradation. Soil structure, fertility, microbial and faunal biodiversity have declined, and root diseases are common unless genetic resistance, soil fumigation and/or seed treatments are used. Primarily for environmental reasons and increasing demands for safe and healthy food from the public, farmers have switched over to organic production at an increasing rate. During a transition period of about 5 years, organic farmers may face problems with yield losses and pest or disease problems. However, in well-managed, long-term organic farms, soilborne diseases need not be a problem. Several studies in which disease severity was compared in organic and conventional farming systems (or with soils from those systems) showed that root diseases are generally less severe in organically than conventionally managed soils. The reasons for reduced root disease severity have seldom been investigated, although relationships with nitrogen supply or microbial diversity have sometimes been found. Crop protection in organic farming is generally not directed at controlling particular pathogens or pests but at management of the environment so that plants are able to withstand potential attacks. Resistant cultivars adapted to the local conditions are in demand among organic farmers. However, the main practices that contribute to disease control are long, balanced rotations, organic amendments and reduced tillage, all geared towards maintenance of the soil organic matter content and fertility. Organic farmers can make use of biological control agents and natural toxic compounds in plant extracts. However, these practices are methods of last resort.
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References
Abadie C, Edel V, Alabouvette C (1998) Soil suppressiveness to fusarium wilt: influence of a cover-plant on density and diversity of fusarium populations. Soil Biology and Biochemistry 30, 643–649.
Alabouvette C (1999) Fusarium wilt suppressive soils: an example of disease-suppressive soils. Australasian Plant Pathology 28, 57–64.
Alvarez T, Frampton GK, Goulson D (2001) Epigeic collembola in winter wheat under organic, integrated and conventional farm management regimes. Agriculture Ecosystems and Environment 83, 95–110.
Bäuer K (1994) Possibilities and limits of the layout of farming systems in the view of the increased utilisation of self-regulation mechanisms in the agroecosystems. Berichte ueber Landwirtschaft Sonderheft 209, 103–122.
Berkelmans R, Ferris H, Tenuta M, van Bruggen AHC (2003) Long-term effects of crop management on trophic levels of nematodes other than plant parasitic nematodes disappear after one year of uniform treatment. Applied Soil Ecology (in press).
Berlath M, Backes F, Krämer J (1998) Mould spectrum and mycotoxins (Deoxynivalenol and Ochratoxin A) in grain samples from ecological and integrated cultivated sites. Agribiological Research 51, 369–376.
Birzele B, Meier A, Hindorf H, Krämer J, Dehne HW (2002). Epidemiology of Fusarium infection and deoxynivalenol content in winter wheat in the Rhineland, Germany. European Journal of Plant Pathology 108, 667–673.
Blanchart E (1992) Restoration by Earthworms (Megascolecidae) of the macro-aggregate structure of a destructured savanna soil under field conditions. Soil Biology and Biochemistry 24, 1587–1594.
Blok WJ, Lamers JG, Termorshuizen AJ, Bollen GJ (2000) Control of soilborne plant pathogens by incorporating fresh organic amendments followed by tarping. Phytopathology 90, 253–259.
Boehm MJ Wu T, Stone AG, Kraakman B, Iannotti DA, Wilson GE, Madden LV, Hoitink HAJ (1997) Cross-polarized magic-angle spinning 13C nuclear magnetic resonance spectroscopic characterization of soil organic matter relative to culturable bacterial species composition and sustained biological control of pythium root rot. Applied and Environmental Microbiology 63, 162–168.
Bulluck LR, Brosius N, Evanylo GK, Ristaino JB (2002) Organic and synthetic fertility amendments influence soil microbial, physical and chemical properties on organic and conventional farms. Applied Soil Ecology 19, 147–160.
Bulluck LR, Ristaino JB (2002) Effect of synthetic and organic soil fertility amendments on southern blight, soil microbial communities, and yield of processing tomatoes. Phytopathology 92, 181–189.
Calderon FJ, Jackson LE, Scow KM, Rolston DE (2000) Microbial responses to simulated tillage in cultivated and uncultivated soils. Soil Biology and Biochemistry 32, 1547–1559.
Chern LL, Ko WH (1989) Characteristics of inhibition of suppressive soil created by monoculture with radish in the presence of Rhizoctonia solani. Journal of Phytopathology 126, 237–245.
Chung YR, Hoitink HAJ, Lipps PE (1988) Interactions between organic-matter decomposition level and soil-borne disease severity. Agriculture Ecosystems and Environment 24, 183–193.
Clark MS, Ferris H, Klonsky K, Lanini WT, Brüggen AHC, Zalom FG (1998a) Agronomic, economic, and environmental comparison of pest management in conventional and alternative tomato and corn systems in northern California. Agriculture Ecosystems and Environment 68, 51–71.
Clark MS, Horwath WR, Shennan C, Scow KM (1998b) Changes in soil chemical properties resulting from organic and low-input farming practices. Agronomy Journal 90, 662–671.
Cook RJ, Baker KF (1983) ‘The nature and practice of biological control of plant pathogens.’ (American Phytopathological Society: St Paul, MN, USA)
Daamen RA, Wijnands FG, van der Vliet G (1989) Epidemics of diseases and pests of winter wheat at different levels of agrochemical input. A study on the possibilities of designing an integrated cropping system. Journal Phytopathology 125, 305–319.
Doran JW, Fraser DG, Culik MN, Liebhardt WC (1987) Influence of alternative and conventional agricultural management on soil microbial processes and nitrogen availability. American Journal Alternative Agriculture 2, 99–106.
Drinkwater LE, Wagoner P, Sarrantonio M (1998) Legume-based cropping systems have reduced carbon and nitrogen losses. Nature London 396, 262–265.
Drinkwater LE, Workneh F, Letourneau DK, van Bruggen AHC, Shennan C (1995) Fundamental differences between conventional and organic tomato agroecosystems in California. Ecological Applications 5, 1098–1112.
El Titi A, Richter J (1987) Integrierter Pflanzenschutz im Ackerbau: Das Lautenbach Projekt. III. Schädlinge und Krankheiten 1979–1983. Zeitschrift für Pflanzenkrankheiten und Pflanzenschutz 94, 1–13.
Fahmy MA (2000) Potential genotoxicity of copper sulphate treated mice. Cytology 65, 235–242.
Ferris H, Venette RC, Lau SS (1996) Dynamics of nematode communities in tomatoes grown in conventional and organic farming systems, and their impact on soil fertility. Applied Soil Ecology 3, 161–175.
Finckh MR (1997) The use of biodiversity to restrict plant diseases and some consequences for farmers and society. In ‘Ecology in agriculture’. (Ed. LE Jackson) pp. 203–237. (Academic Press: San Diego, California, USA)
Foissner W (1992) Comparative studies on the soil life in ecofarmed and conventionally farmed fields and grasslands of Austria. Agriculture Ecosystems and Environment 40, 207–218.
Fravel D (1999) Hurdles and bottlenecks on the road to biocontrol of plant pathogens. Australasian Plant Pathology 28, 53–56.
Grünwald NJ, Hu S, van Brüggen AHC (2000) Short-term cover crop decomposition in organic and conventional soils: characterization of soil C,N, microbial and plant pathogen dynamics. European Journal of Plant Pathology 106, 37–50.
Grünwald NJ, Workneh F, Hu S, van Brüggen AHC (1997) Comparison of an in vitro and a damping-off assay to test soils for suppressiveness to Pythium aphanidermatum. European Journal of Plant Pathology 103, 55–63.
Hannukkala AO, Korva J, Tapio E (1990) The cropping systems at Suitia: the experimental design. Journal of Agricultural Science in Finland 62, 295–307.
Hannukkala AO, Tapio E (1990) Conventional and organic cropping systems at Suitia. V. Cereal diseases. Journal of Agricultural Science in Finland 62, 339–347.
Hoitink HAJ, Boehm MJ (1999) Biocontrol within the context of soil microbial communities: a substrate-dependent phenomenon. Annual Review of Phytopathology 37, 427–446.
Jaffee BA, Ferris H, Scow KM (1998) Nematode-trapping fungi in organic and conventional cropping systems. Phytopathology 88, 344–350.
Jastrow JD, Miller RM, Lussenhop J (1998) Contributions of interacting biological mechanisms to soil aggregate stabilization in restored prairie. Soil Biology and Biochemistry 30, 905–916.
Koch G (1991) Fungal pathogens on winter wheat in comparison of 2 conventional farms and one biodynamic farm in Hess (FRG) 1986/87. Zeitschrift für Pflanzenkrankheiten und Pflanzenschutz 98, 125–136.
Knudsen IMB, Debosz K, Hockenhull J, Jensen DF, Elmholt S (1999a) Suppressiveness of organically and conventionally managed soils towards brown foot rot of barley. Applied Soil Ecology 12, 61–72.
Knudsen IMB, Elmholt S, Hockenhull J, Jensen DF (1999a) Distribution of saprophytic fungi antagonistic to Fusarium culmorum in two differently cultivated field soils, with special emphasis on the genus Fusarium. Biological Agriculture and Horticulture 12, 61–79.
Lammerts van Bueren ET (2002) Organic plant breeding and propagation: concepts and strategies. PhD Thesis, Wageningen University, The Netherlands.
Lampkin N (1999) ‘Organic farming.’ (Farming Press, Miller Freeman, UK Ltd: Tonbridge, UK)
Langer V (1995) Pests and disease in organically grown vegetables in Denmark: a survey of problems and use of control methods. Biological Agriculture and Horticulture 12, 151–171.
Lazarovits G, Tenuta M, Conn KL (2001) Organic amendments as a disease control strategy for soilborne diseases of high-value agricultural crops. Australasian Plant Pathology 30, 111–117.
Liiri M, Setälä H, Haimi J, Pennanen T, Fritze H (2002) Soil processes are not influenced by the functional complexity of soil decomposer food webs under disturbance. Soil Biology and Biochemistry 34, 1009–1020.
Linderman RG (1989) Organic amendments and soil-borne diseases. Canadian Journal of Plant Pathology 11, 180–183.
Lotter DW, Granett J, Omer AD (1999) Differences in Grape Phylloxera-related grapevine root damage in organically and conventionally managed vineyards in California. Hortscience 34, 1108–1111.
Bäder P, Fliessbach A, Dubois D, Gunst L, Fried P, Niggli U (2002) Soil fertility and biodiversity in organic farming. Science 296, 1694–1697.
McSorley R (2002) Nematode and insect management in transitional agricultural systems. Horttechnology 12, 597–600.
Miyazawa K, Tsuji H, Yamagata M, Nakano H, Nakamoto T (2002) The effects of cropping systems and fallow managements on micro-arthropod populations. Plant Production Science 5, 257–265.
Neher DA, Olson RK (1999) Nematode communities in soils of four farm cropping management systems. Pedobiologia 43, 430–438.
Ngouajio M, McGiffen ME (2002) Going organic changes weed population dynamics. Horttechnology 12, 590–596.
Oerke EC, Dehne HW, Schonbeck F, Weber A (1994) Conclusions and perspectives. In ‘Crop production and crop protection, estimated losses in major food and cash crops’. (Eds EC Oerke, HW Dehne, F Schonbeck, A Weber) pp. 742–768. (Elsevier: Amsterdam, The Netherlands)
O'Sullivan CM, Gormally MJ (2002) A comparison of ground beetle (Carabidae: coleoptera) communities in an organic and conventional potato crop. Biological Agriculture and Horticulture 20, 99–110.
Piorr HP, Hindorf H (1986) The implication for plant disease and pests during the conversion from conventional to biological agriculture. In ‘The importance of biological agriculture in a world of diminishing resources’. (Eds H Vogtmann, E Boehncke, I Fricke) pp. 421–435. (Verlagsgruppe: Witzenhausen, Germany)
Poudel DD, Ferris H, Klonsky K, Horwath WR, Scow KM, van Brüggen AHC, Lanini WT, Mitchell JP, Temple SR (2001) The sustainable agriculture farming systems project in California's Sacramento Valley. Outlook on Agriculture 30, 109–116.
Pulleman M (2002) Interactions between soil organic matter dynamics and soil structure as affected by farm management. PhD Thesis, Wageningen University, The Netherlands.
Rapport DJ (1995) Ecosystem services and management options as blanket indicators of ecosystem health. Journal of Aquatic Ecosystem Health 4, 97–105.
Reganold JP, Palmer AS, Lockhart JC, Macgregor AN (1993) Soil quality and financial performance of biodynamic and conventional farms in New Zealand. Science 260, 344–349.
Roget DK (1995) Decline in root rot (Rhizoctonia solani AG-8) in wheat in a tillage and rotation experiment at Avon, South Australia. Australian Journal of Experimental Agriculture 35, 1009–1013
Rosado-May FJ, Werner MR, Gliessman SR, Webb R (1994) Incidence of strawberry root fungi in conventional and organic production systems. Applied Soil Ecology 1, 261–267.
Ryan MH, Chilvers GA, Dumaresq DC (1994) Colonization of wheat by VA-mycorrhizal fungi was found to be higher on a farm managed in an organic manner than on a conventional neighbour. Plant and Soil 160, 33–40.
Scheuerell S, Mahaffee W (2002) Compost tea: principles and prospects for plant disease control. Compost Science and Utilization 10, 313–338.
Schjønning P, Elmholdt S, Munkholm LJ, Debosz K (2002) Soil quality aspects of humid sandy loams as influenced by organic and conventional long-term management. Agriculture Ecosystems and Environment 88, 195–214.
Schollenberger M, Suchy S, Jara HT, Drochner W, Muller H M (1999) A survey of Fusarium toxins on cereal-based foods marketed in an area of southwest Germany. Mycopathologia 147, 49–57.
Schüler C, Biala J, Bruns C, Gottschall R, Ahlers S, Vogtmann H (1989) Suppression of root rot on peas, beans, and beet roots caused by Pythium ultimum and Rhizoctonia solani through the amendment of growing media with composted organic household waste. Journal of Phytopathology 127, 227–238.
Schüler C, Pikny J, Nasir M, Vogtmann H (1993) Effects of composted organic kitchen and garden waste on Mycosphaerella pinodes (Berk, et Blox) Vestergr., causal organism of root rot on peas (Pisum sativum L.). Biological Agriculture and Horticulture 9, 353–360.
Sivapalan A, Morgan WC, Franz PR (1993) Monitoring populations of soil microorganisms during a conversion from a conventional to an organic system of vegetable growing. Biological Agriculture and Horticulture 10, 9–27.
Suatmadjii RW (1969) ‘Studies on the effect of Tagetes species on plant parasitic nematodes.’ (H Veenman and Zonen NV: Wageningen, The Netherlands)
Szczech M, Rondomaski W, Brzeski MW, Smoliska U, Kotowski JF (1993) Suppressive effect of commercial earthworm compost on some root infecting pathogens of cabbage and tomato. Biological Agriculture and Horticulture 10, 47–52.
Tamis WLM, van den Brink WJ (1998) Inventarisatie van ziekten en plagen in wintertarwe in gangbare, geïntegreerde en ecologische teeltsystemen in Nederland in de période 1993-1997. IPO-DLO Rapport nr. 98-01. Wageningen.
Tamis WLM, van den Brink WJ (1999) Conventional, integrated and organic winter wheat production in the Netherlands in the period 1993–1997. Agriculture Ecosystems and Environment 76, 47–59.
Termorshuizen AJ (2002) Cultural practices. In ‘Plant pathologist's pocketbook (3rd edn)’. (Eds JM Waller, JM Lenne, SJ Waller) pp. 318–327. (CAB International)
Tuitert G, Szczech M, Bollen GJ (1998) Suppression of Rhizoctonia solani in potting mixtures amended with compost made from organic household waste. Phytopathology 88, 764–773.
Van Brüggen AHC (1995) Plant-disease severity in high-input compared to reduced-input and organic farming systems. Plant Disease 79, 976–984.
Van Bruggen AHC, Rössing WAH (2001) Complementariteit van vergelijkend en ontwerpend bedrijfssystemenonderzoek, met specifieke aandacht voor biologische bedrijfssystemen. In ‘Ecologisering en bedrijfssystemenonderzoek: waarheen, waarvoor?’ (Eds J Wolfert, R Bookij, MK van Ittersum) pp. 51–65. (KLV: Wageningen)
Van Bruggen AHC, Semenov AM (1999) A new approach to the search for indicators of root disease suppression. Australasian Plant Pathology 28, 4–10.
Van Bruggen AHC, Semenov AM (2000) In search of biological indicators for soil health and disease suppression. Applied Soil Ecology 15, 13–24.
Voland RP, Epstein AH (1994) Development of suppressiveness to diseases caused by Rhizoctonia solani in soils amended with composted and noncomposted manure. Plant Disease 78, 461–466.
Wijnands FG, Schröder JJ, Sukkel W, Booij R (2000) ‘Biologisch Bedrijf onder de loep: Biologische akkerbouw en vollegraondsgroenteteelt in perspectief (Praktijk Onderzoek Plant en Omgeving, Lelystad, The Netherlands)
Workneh F, van Brüggen AHC (1994a) Suppression of corky root of tomatoes in soils from organic farms associated with soil microbial activity and nitrogen status of soil and tomato tissue. Phytopathology 84, 688–694.
Workneh F, van Brüggen AHC (1994b) Microbial density, composition, and diversity in organically and conventionally managed rhizosphere soil in relation to suppression of corky root of tomatoes. Applied Soil Ecology 1, 219–230.
Workneh F, van Brüggen AHC, Drinkwater LE, Shennan C (1993) Variables associated with corky root and Phytophthora root rot of tomatoes in organic and conventional farms. Phytopathology 83, 581–589.
Zang X, Fukuda EK, Rosen JD (1998) Multiresidue analytical procedure for insecticides used by organic farmers. Journal of Agricultural and Food Chemistry 46, 2206–2210.
Zinati GM (2002) Transition from conventional to organic farming systems. I. Challenges, recommendations, and guidelines for pest management. Horttechnology 12, 606–610.
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van Bniggen, A.H.C., Termorskuizen, A.J. Integrated approaches to root disease management in organic farming systems. Australasian Plant Pathology 32, 141–156 (2003). https://doi.org/10.1071/AP03029
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DOI: https://doi.org/10.1071/AP03029