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Tracking the primary photoconversion events in rhodopsins by ultrafast optical spectroscopy

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Abstract

Opsins are a broad class of photoactive proteins, found in all classes of living beings from bacteria to higher animals, which work either as light-driven ion pumps or as visual pigments. The photoactive function in opsins is triggered by the ultrafast isomerization of the retinal chromophore around a specific carbon double bond, leading to a highly distorted, spectrally red-shifted photoproduct. Understanding, by either experimental or computational methods, the time course of this photoisomerization process is of utmost importance, both for its biological significance and because opsin proteins are the blueprint for molecular photoswitches. This paper focuses on the ultrafast 11-cis to all-trans isomerization in visual rhodopsins, and has a twofold goal: (i) to review the most recent experimental and computational efforts aimed at exposing the very early phases of photoconversion; and (ii) discuss future advanced experiments and calculations that will allow an even deeper understanding of the process. We present high time resolution pump-probe data, enabling us to follow the wavepacket motion through the conical intersection connecting excited and ground states, as well as femtosecond stimulated Raman scattering data allowing us to track the subsequent structural evolution until the first stable all-trans photoproduct is reached. We conclude by introducing computational results for two-dimensional electronic spectroscopy, which has the potential to provide even greater detail on the evolution of the electronic structure of retinal during the photoisomerization process.

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References

  1. O. P. Ernst, D. T. Lodowski, M. Elstner, P. Hegemann, L. S. Brown, H. Kandori, Chem. Rev. 2014 114 126.

    Article  CAS  PubMed  Google Scholar 

  2. J. L. Spudich, C. S. Yang, K. H. Jung, E. N. Spudich, Annu. Rev. Cell Dev. Biol. 2000 16 365.

    Article  CAS  PubMed  Google Scholar 

  3. D. Oesterhelt, W. Stoeckenius, Nat. New Biol. 1971 233 149.

    Article  CAS  PubMed  Google Scholar 

  4. W. Stoeckenius, Trends Biochem. Sci. 1985 10 483.

    Article  CAS  PubMed  Google Scholar 

  5. O. A. Sineshchekov, K.-H. Jung, J. L. Spudich, Proc. Natl. Acad. Sci. U. S. A. 2002 99 8989.

    Article  CAS  Google Scholar 

  6. F. Zhang, J. Vierock, O. Yizhar, L. E. Fenno, S. Tsunoda, A. Kianianmomeni, M. Prigge, A. Berndt, J. Cushman, J. Polle, J. Magnuson, P. Hegemann, K. Deisseroth, Cell 2011 147 1446.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. A. Terakita, Genome Biol. 2005 6 213.

    Article  PubMed  PubMed Central  Google Scholar 

  8. M. B. Nielsen, Chem. Soc. Rev. 2009 38 913.

    Article  CAS  PubMed  Google Scholar 

  9. D. Baylor, Proc. Natl. Acad. Sci. U. S. A. 1996 93 560.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. A. Wand, I. Gdor, J. Zhu, M. Sheves, S. Ruhman, Annu. Rev. Phys. Chem. 2013 64 437.

    Article  CAS  PubMed  Google Scholar 

  11. T. Yoshizawa, G. Wald, Nature 1963 197 1279.

    Article  CAS  PubMed  Google Scholar 

  12. R. W. Schoenlein, L. A. Peteanu, R. A. Mathies, C. V. Shank, Science 1991 254 412.

    Article  CAS  PubMed  Google Scholar 

  13. R. A. Mathies, C. H. B. Cruz, W. T. Pollard, C. V. Shank, Science 1988 240 777.

    Article  CAS  PubMed  Google Scholar 

  14. R. Govindjee, S. P. Balshov, T. G. Ebrey, Biophys. J. 1990 58 597.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. J. E. Kim, M. J. Tauber, R. A. Mathies, Biochemistry 2001 40 13774.

    Article  CAS  PubMed  Google Scholar 

  16. H. Kandori, Y. Katsuta, M. Ito, H. Sasabe, J. Am. Chem. Soc. 1995 117 2669.

    Article  CAS  Google Scholar 

  17. S. L. Logunov, L. Song, M. A. ElSayed, J. Phys. Chem. 1996 100 18586.

    Article  CAS  Google Scholar 

  18. P. Hamm, M. Zurek, T. Roschinger, H. Patzelt, D. Oesterhelt, W. Zinth, Chem. Phys. Lett. 1996 263 613.

    Article  CAS  Google Scholar 

  19. R. S. Becker, K. Freedman, J. Am. Chem. Soc. 1985 107 1477.

    Article  CAS  Google Scholar 

  20. R. R. Birge, Annu. Rev. Phys. Chem. 1990 41 683.

    Article  CAS  PubMed  Google Scholar 

  21. F. Lumento, V. Zanirato, S. Fusi, E. Busi, L. Latterini, F. Elisei, A. Sinicropi, T. Andruniow, N. Ferre, R. Basosi, M. Olivucci, Angew. Chem., Int. Ed. 2007 46 414.

    Article  CAS  Google Scholar 

  22. A. Sinicropi, E. Martin, M. Ryazantsev, J. Helbing, J. Briand, D. Sharma, J. Léonard, S. Haacke, A. Cannizzo, M. Chergui, V. Zanirato, S. Fusi, F. Santoro, R. Basosi, N. Ferré, M. Olivucci, Proc. Natl. Acad. Sci. U. S. A. 2008 105 17642.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. D. J. Tannor, Introduction to Quantum Mechanics: A Time Dependent Perspective, University Science Press, Sausalito, 2007.

    Google Scholar 

  24. M. Garavelli, P. Celani, F. Bernardi, M. A. Robb, M. Olivucci, J. Am. Chem. Soc. 1997 119 6891.

    Article  CAS  Google Scholar 

  25. R. Gonzalez-Luque, M. Garavelli, F. Bernardi, M. Merchan, M. A. Robb, M. Olivucci, Proc. Natl. Acad. Sci. U. S. A. 2000 97 9379.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. M. Klessinger, and J. Michl, Excited States and Photochemistry of Organic Molecules, VCH Publishers, New York, 1994.

    Google Scholar 

  27. B. G. Levine, T. M. Martinez, Annu. Rev. Phys. Chem. 2007 58 613.

    Article  CAS  PubMed  Google Scholar 

  28. T. J. Martinez, Nature 2010 467 412.

    Article  CAS  PubMed  Google Scholar 

  29. F. Gai, K. C. Hasson, P. A. Anfinrud, Proc. Natl. Acad. Sci. U. S. A. 1996 93 15124.

    Article  PubMed  PubMed Central  Google Scholar 

  30. F. Gai, K. C. Hasson, J. C. McDonald, P. A. Anfinrud, Science 1998 279 1886.

    Article  CAS  PubMed  Google Scholar 

  31. T. Kobayashi, T. Saito, H. Otani, Nature 2001 414 531.

    Article  CAS  PubMed  Google Scholar 

  32. S. Ruhman, B. X. Hou, N. Friedman, M. Ottolenghi, M. Sheves, J. Am. Chem. Soc. 2002 124 8854.

    Article  CAS  PubMed  Google Scholar 

  33. M. Olivucci, A. Lami, F. Santoro, Angew. Chem., Int. Ed. 2005 44 5118.

    Article  CAS  Google Scholar 

  34. A. Kahan, O. Nahmias, N. Friedman, M. Sheves, S. Ruhman, J. Am. Chem. Soc. 2007 129 537.

    Article  CAS  PubMed  Google Scholar 

  35. B. Loevsky, A. Wand, O. Bismuth, N. Friedman, M. Sheves, S. Ruhman, J. Am. Chem. Soc. 2011 133 1626.

    Article  CAS  PubMed  Google Scholar 

  36. J. B. Hurley, T. G. Ebrey, B. Honig, M. Ottolenghi, Nature 1977 270 540.

    Article  CAS  PubMed  Google Scholar 

  37. R. R. Birge, Biochim. Biophys. Acta 1990 1016 293.

    Article  CAS  PubMed  Google Scholar 

  38. L. Song, M. El-Sayed, J. Am. Chem. Soc. 1998 120 8889.

    Article  CAS  Google Scholar 

  39. J. Herbst, K. Heyne, R. Diller, Science 2002 297 822.

    Article  CAS  PubMed  Google Scholar 

  40. A. Warshel, Z. T. Chu, J. Phys. Chem. B 2001 105 9587.

    Article  CAS  Google Scholar 

  41. A. Cembran, F. Bernardi, M. Olivucci, M. Garavelli, Proc. Natl. Acad. Sci. U. S. A. 2005 102 6255.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. S. A. Kovalenko, A. L. Dobryakov, J. Ruthmann, N. P. Ernsting, Phys. Rev. A 1999 59 2369.

    Article  CAS  Google Scholar 

  43. Z. Vardeny, J. Tauc, Opt. Commun. 1981 39 396.

    Article  CAS  Google Scholar 

  44. D. Polli, D. Brida, S. Mukamel, G. Lanzani, G. Cerullo, Phys. Rev. A 2010 82 053809.

    Article  CAS  Google Scholar 

  45. G. Cerullo, S. de Silvestri, Rev. Sci. Instrum. 2003 74 1.

    Article  CAS  Google Scholar 

  46. D. Brida, C. Manzoni, G. Cirmi, M. Marangoni, S. Bonora, P. Villoresi, S. de Silvestri, G. Cerullo, J. Opt. 2010 12 013001.

    Article  Google Scholar 

  47. C. Manzoni, D. Polli, G. Cerullo, Rev. Sci. Instrum. 2006 77 023103.

    Article  CAS  Google Scholar 

  48. D. Polli, L. Lüer, G. Cerullo, Rev. Sci. Instrum. 2007 78 103108.

    Article  PubMed  CAS  Google Scholar 

  49. M. Bargheer, N. Zhavoronkov, M. Woerner, T. Elsaesser, ChemPhysChem 2006 7 783.

    Article  CAS  PubMed  Google Scholar 

  50. M. Gao, C. Lu, H. Jean-Ruel, L. C. Liu, A. Marx, K. Onda, S. Koshihara, Y. Nakano, X. Shao, T. Hiramatsu, G. Saito, H. Yamochi, R. R. Cooney, G. Moriena, G. Sciaini, R. J. Dwayne Miller, Nature 2013 496 343.

    Article  CAS  PubMed  Google Scholar 

  51. D. W. McCamant, P. Kukura, R. A. Mathies, J. Phys. Chem. A 2003 107 8208.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  52. D. W. McCamant, P. Kukura, S. Yoon, R. A. Mathies, Rev. Sci. Instrum. 2004 75 4971.

    Article  CAS  PubMed  Google Scholar 

  53. P. Kukura, D. W. McCamant, R. A. Mathies, Annu. Rev. Phys. Chem. 2007 58 461.

    Article  CAS  PubMed  Google Scholar 

  54. C. Fang, R. R. Frontiera, R. Tran, R. A. Mathies, Nature 2009 462 200.

    Article  CAS  PubMed  Google Scholar 

  55. T. Brixner, J. Stenger, H. M. Vaswani, M. Cho, R. E. Blankenship, G. R. Fleming, Nature 2005 434 625.

    Article  CAS  PubMed  Google Scholar 

  56. E. Collini, C. Y. Wong, K. E. Wilk, P. M. G. Curmi, P. Brumer, G. D. Scholes, Nature 2010 463 644.

    Article  CAS  PubMed  Google Scholar 

  57. S. Mukamel, Annu. Rev. Phys. Chem. 2000 51 691.

    Article  CAS  PubMed  Google Scholar 

  58. P. Hamm, and M. Zanni, Concepts and Methods of 2D Infrared Spectroscopy, Cambridge University Press, 2011.

    Book  Google Scholar 

  59. M. L. Cowan, J. P. Ogilvie, R. J. D. Miller, Chem. Phys. Lett. 2004 386 184.

    Article  CAS  Google Scholar 

  60. T. Brixner, I. V. Stiopkin, G. R. Fleming, Opt. Lett. 2004 29 884.

    Article  CAS  PubMed  Google Scholar 

  61. S. H. Shim, D. B. Strasfeld, Y. L. Ling, M. T. Zanni, Proc. Natl. Acad. Sci. U. S. A. 2007 104 14197.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  62. E. M. Grumstrup, S. H. Shim, M. A. Montgomery, N. H. Damrauer, M. T. Zanni, Opt. Express 2007 15 16681.

    Article  PubMed  Google Scholar 

  63. P. F. Tekavec, J. A. Myers, K. L. M. Lewis, J. P. Ogilvie, Opt. Lett. 2009 34 1390.

    Article  PubMed  Google Scholar 

  64. D. Brida, C. Manzoni, G. Cerullo, Opt. Lett. 2012 37 3027.

    Article  PubMed  Google Scholar 

  65. Computational Photochemistry, ed. M. Olivucci, Elsevier, Amsterdam, 2005, vol. 16.

  66. K. Andersson, P.-A. Malmqvist, B. O. Roos, J. Chem. Phys. 1992 96 1218.

    Article  CAS  Google Scholar 

  67. I. Rivalta, A. Nenov, G. Cerullo, S. Mukamel, M. Garavelli, Int. J. Quantum Chem. 2014 114 85.

    Article  CAS  Google Scholar 

  68. A. Nenov, I. Rivalta, G. Cerullo, S. Mukamel, M. Garavelli, J. Phys. Chem. Lett. 2014 5 767.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  69. P. Altoè, M. Stenta, A. Bottoni, M. Garavelli, Theor. Chem. Acc. 2007 118 219.

    Article  CAS  Google Scholar 

  70. G. Groenhof, et al. Adv. Quantum Chem. 2010 59 181.

    Article  CAS  Google Scholar 

  71. M. Barbatti, Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2011 1 620.

    CAS  Google Scholar 

  72. H. M. Senn, W. Thiel, Top. Curr. Chem. 2007 268 173.

    Article  CAS  Google Scholar 

  73. P. Cieplak, F.-Y. Dupradeau, Y. Duan, J. Wang, J. Phys.: Condens. Mater 2009 21 333102.

    Google Scholar 

  74. W. Chen, W. L. Hase, B. Schlegel, Chem. Phys. Lett. 1994 228 436.

    Article  CAS  Google Scholar 

  75. B. H. Lengsfield, D. R. Yarkony, Adv. Chem. Phys. 1992 82 1.

    CAS  Google Scholar 

  76. J. Stalring, B. Anders, R. Lindh, Mol. Phys. 2001 99 103.

    Article  CAS  Google Scholar 

  77. L. Verlet, Phys. Rev. 1967 159 98.

    Article  CAS  Google Scholar 

  78. J. C. Tully, J. Chem. Phys. 1990 93 1061.

    Article  CAS  Google Scholar 

  79. J. C. Tully, Int. J. Quant. Chem., Quantum Biol. Symp. 1991 40 299.

    Article  Google Scholar 

  80. E. Fabiano, T. W. Keal, W. Thiel, Chem. Phys. 2008 349 334.

    Article  CAS  Google Scholar 

  81. G. Granucci, M. Persico, J. Chem. Phys. 2007 126 134114.

    Article  PubMed  CAS  Google Scholar 

  82. W. J. DeGrip, F. J. M. Daemen, S. L. Bonting, Methods Enzymol. 1980 67 301.

    Article  CAS  Google Scholar 

  83. D. Polli, P. Altoe, O. Weingart, K. M. Spillane, C. Manzoni, D. Brida, G. Tomasello, G. Orlandi, P. Kukura, R. A. Mathies, M. Garavelli, G. Cerullo, Nature 2010 467 440.

    Article  CAS  PubMed  Google Scholar 

  84. L. A. Peteanu, R. W. Schoenlein, Q. Wang, R. A. Mathies, C. V. Shank, Proc. Natl. Acad. Sci. U. S. A. 1993 90 11762.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  85. Q. Wang, R. W. Schoenlein, L. A. Peteanu, R. A. Mathies, C. V. Shank, Science 1994 266 422.

    Article  CAS  PubMed  Google Scholar 

  86. P. Kukura, D. W. McCamant, S. Yoon, D. B. Wandschneider, R. A. Mathies, Science 2005 310 1006.

    Article  CAS  PubMed  Google Scholar 

  87. A. Warshel, Nature 1976 260 679.

    Article  CAS  PubMed  Google Scholar 

  88. A. Warshel, N. Barboy, J. Am. Chem. Soc. 1982 104 1469.

    Article  CAS  Google Scholar 

  89. T. Okada, M. Sugihara, A. N. Bondar, M. Elstner, P. Entel, V. Buss, J. Mol. Biol. 2004 342 571.

    Article  CAS  PubMed  Google Scholar 

  90. R. W. Schoenlein, L. A. Peteanu, Q. Wang, R. A. Mathies, C. V. Shank, J. Phys. Chem. 1993 97 12087.

    Article  CAS  Google Scholar 

  91. J. Fan, B. Rohrer, G. Moiseyev, J. Ma, R. K. Crouch, Proc. Natl. Acad. Sci. U. S. A. 2003 100 13662.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  92. T. Yoshizawa, G. Wald, Nature 1963 197 1279.

    Article  CAS  PubMed  Google Scholar 

  93. S. J. Hug, J. W. Lewis, D. S. Kliger, J. Am. Chem. Soc. 1988 110 1998.

    Article  CAS  Google Scholar 

  94. D. Polli, O. Weingart, D. Brida, E. Poli, M. Maiuri, K. M. Spillane, A. Bottoni, P. Kukura, R. A. Mathies, G. Cerullo, M. Garavelli, Angew. Chem., Int. Ed. 2014 53 2504.

    Article  CAS  Google Scholar 

  95. W. C. Chung, S. Nanbu, T. Ishida, J. Phys. Chem. B 2012 116 8009.

    Article  CAS  PubMed  Google Scholar 

  96. A. Strambi, P. B. Coto, L. M. Frutos, N. Ferré, M. Olivucci, J. Am. Chem. Soc. 2008 130 3382.

    Article  CAS  PubMed  Google Scholar 

  97. J. D. Biggs, S. Mukamel, J. Chem. Phys. 2011 134 161101.

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  98. E. C. Y. Yan, Z. Ganim, M. A. Kazmi, B. S. W. Chang, T. P. Sakmar, R. A. Mathies, Biochemistry 2004 43 10867.

    Article  CAS  PubMed  Google Scholar 

  99. I. Rivalta, A. Nenov, O. Weingart, G. Cerullo, M. Garavelli, S. Mukamel, J. Phys. Chem. B 2014 118 8396.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  100. G. Zgrablic, K. Voitchovsky, M. Kindermann, S. Haacke, M. Chergui, Biophys. J. 2005 88 2779.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  101. I. Rivalta, A. Nenov, M. Garavelli, Phys. Chem. Chem. Phys. 2014 16 16865.

    Article  CAS  PubMed  Google Scholar 

  102. V. I. Prokhorenko, A. M. Nagy, S. A. Waschuk, L. S. Brown, R. R. Birge, R. J. D. Miller, Science 2006 313 1257.

    Article  CAS  PubMed  Google Scholar 

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Polli, D., Rivalta, I., Nenov, A. et al. Tracking the primary photoconversion events in rhodopsins by ultrafast optical spectroscopy. Photochem Photobiol Sci 14, 213–228 (2015). https://doi.org/10.1039/c4pp00370e

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