Skip to main content
Log in

Bioinformatics

Cellular deconvolution with continuous transitions

  • News & Views
  • Published:

From Nature Computational Science

View current issue Submit your manuscript

A recent work introduces a cellular deconvolution method, MeDuSA, of estimating cell-state abundance along a one-dimensional trajectory from bulk RNA-seq data with fine resolution and high accuracy, enabling the characterization of cell-state transition in various biological processes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1: The overview of various cellular deconvolution methods.

References

  1. Newman, A. M. et al. Nat. Biotechnol. 37, 773–782 (2019).

    Article  Google Scholar 

  2. Jin, H. & Liu, Z. Genome Biol. 22, 102 (2021).

    Article  Google Scholar 

  3. Avila Cobos, F., Alquicira-Hernandez, J., Powell, J. E., Mestdagh, P. & De Preter, K. Nat. Commun. 11, 5650 (2020).

    Article  Google Scholar 

  4. Song, L., Sun, X., Qi, T. & Yang, J. Nat. Comput. Sci. https://doi.org/10.1038/s43588-023-00487-2 (2023).

  5. Wagner, A., Regev, A. & Yosef, N. Nat. Biotechnol. 34, 1145–1160 (2016).

    Article  Google Scholar 

  6. Trapnell, C. et al. Nat. Biotechnol. 32, 381–386 (2014).

    Article  Google Scholar 

  7. Frishberg, A. et al. Nat. Methods 16, 327–332 (2019).

    Article  Google Scholar 

  8. Allen, M. P. Understanding Regression Analysis 176–180 (Springer, 1997).

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jialiang Huang.

Ethics declarations

Competing interests

The authors declare no competing interests.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhang, Z., Huang, J. Cellular deconvolution with continuous transitions. Nat Comput Sci 3, 582–583 (2023). https://doi.org/10.1038/s43588-023-00489-0

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s43588-023-00489-0

  • Springer Nature America, Inc.

Navigation