Skip to main content
SpringerLink
Log in

Gene Information eXtension (GIX): effortless retrieval of gene product information on any website

  • Correspondence
  • Published:

From Nature Methods

View current issue Submit your manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1: Screenshot of GIX in the Chrome browser.

Code availability

GIX is available for free without restriction at the Chrome Web Store and the Firefox Add-ons site. Download links, documentation, a tutorial video and source code can be found at https://gene-info.org.

References

  1. Oughtred, R. et al. Nucleic Acids Res. 47, D529–D541 (2019).

    Article  Google Scholar 

  2. Binder, J. X. et al. Database (Oxford) 2014, bau012 (2014).

    Article  Google Scholar 

  3. The Gene Ontology Consortium. Nat. Genet. 25, 25–29 (2000).

    Article  Google Scholar 

  4. Yates, B. et al. Nucleic Acids Res. 45, D619–D625 (2017).

    Article  CAS  Google Scholar 

  5. Uhlén, M. et al. Science 347, 1260419 (2015).

    Article  Google Scholar 

  6. Orchard, S. et al. Nucleic Acids Res. 42, D358–D363 (2014).

    Article  CAS  Google Scholar 

  7. Amberger, J. S., Bocchini, C. A., Scott, A. F. & Hamosh, A. Nucleic Acids Res. 47, D1038–D1043 (2019).

    Article  Google Scholar 

  8. El-Gebali, S. et al. Nucleic Acids Res. 47, D427–D432 (2019).

    Article  Google Scholar 

  9. Fabregat, A. et al. Nucleic Acids Res. 46, D649–D655 (2018).

    Article  CAS  Google Scholar 

  10. UniProt Consortium. Nucleic Acids Res. 46, 2699 (2018).

    Article  Google Scholar 

Download references

Acknowledgements

We are grateful to all members of the Gingras lab for feedback on the extension. We acknowledge funding from the Governments of Canada and Ontario through Genome Canada, Ontario Genomics and the Ontario Research Fund (OGI-139 and RE08-065 to A.-C.G.), the Canadian Institutes of Health Research (Foundation grant FDN143301 to A.-C.G.) and the National Institutes of Health Office of Research Infrastructure Programs (R01OD010929 to M.T. and K. Dolinski). This research was enabled in part by support provided by Compute Canada (https://www.computecanada.ca). A.-C.G. is the Canada Research Chair in Functional Proteomics and the Lea Reichmann Chair in Cancer Proteomics; M.T. is the Canada Research Chair in Systems and Synthetic Biology.

Author information

Authors and Affiliations

  1. Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, ON, Canada

    James D. R. Knight, Payman Samavarchi-Tehrani & Anne-Claude Gingras

  2. Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, QC, Canada

    Mike Tyers

  3. Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada

    Anne-Claude Gingras

Authors
  1. James D. R. Knight
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Payman Samavarchi-Tehrani
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Mike Tyers
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Anne-Claude Gingras
    View author publications

    You can also search for this author in PubMed Google Scholar

Contributions

J.D.R.K., P.S.-T. and A.-C.G. conceived of the extension. J.D.R.K. wrote the code. M.T. provided input on the extension. J.D.R.K. and A.-C.G. wrote the manuscript with input from P.S.-T. and M.T.

Corresponding author

Correspondence to Anne-Claude Gingras.

Ethics declarations

Competing interests

The authors declare no competing interests.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Knight, J.D.R., Samavarchi-Tehrani, P., Tyers, M. et al. Gene Information eXtension (GIX): effortless retrieval of gene product information on any website. Nat Methods 16, 665–666 (2019). https://doi.org/10.1038/s41592-019-0477-9

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41592-019-0477-9

  • Springer Nature America, Inc.

Search

Navigation