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MACHINE LEARNING

Show me the models

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The Kipoi repository provides a home for trained machine-learning models that facilitates their sharing and reuse.

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Fig. 1: Kipoi automates packaging, testing and distribution of deep neural network models.

References

  1. Avsec, Z. et al. Nat. Biotechnol. https://doi.org/10.1038/s41587-019-0140-0 (2019).

  2. Beaulieu-Jones, B. K. & Greene, C. S. Nat. Biotechnol. 35, 342–346 (2017).

    Article  CAS  Google Scholar 

  3. Brendel, W. & Bethge, M. Approximating CNNs with bag-of-local-features models works surprisingly well on ImageNet. Int. Conf. Learn. Represent. https://openreview.net/forum?id=SkfMWhAqYQ (2019).

  4. Taroni, J.N. et al. MultiPLIER: a transfer learning framework for transcriptomics reveals systemic features of rare disease. Preprint at https://doi.org/10.1101/395947 (2019).

  5. Mao, W., Harmann, B., Sealfon, S.C., Zaslavsky, E. & Chikina, M. Pathway-Level Information ExtractoR (PLIER) for gene expression data. Preprint at https://doi.org/10.1101/116061 (2017).

  6. Collado-Torres, L. et al. Nat. Biotechnol. 35, 319–321 (2017).

    Article  CAS  Google Scholar 

  7. Kelley, D. R., Snoek, J. & Rinn, J. L. Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks. Genome Res. 26, 990–999 (2016).

    Article  CAS  Google Scholar 

  8. Perou, C. M. Nat. Genet. 29, 373 (2001).

    Article  CAS  Google Scholar 

  9. Barrett, T. et al. Nucleic Acids Res. 39, D1005–D1010 (2011).

    Article  CAS  Google Scholar 

  10. Rustici, G. et al. Nucleic Acids Res. 41, D987–D990 (2013).

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA

    Casey S. Greene

  2. Childhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, PA, USA

    Casey S. Greene

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  1. Casey S. Greene
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Correspondence to Casey S. Greene.

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Greene, C.S. Show me the models. Nat Biotechnol 37, 623–625 (2019). https://doi.org/10.1038/s41587-019-0143-x

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