Skip to main content
Log in

Masked acid chlorides for proximity labelling of RNA

  • Research Briefing
  • Published:

From Nature Chemistry

View current issue Submit your manuscript

A non-radical proximity labelling platform — BAP-seq — is presented that uses subcellular-localized BS2 esterase to convert unreactive enol-based probes into highly reactive acid chlorides in situ to label nearby RNAs. When paired with click-handle-mediated enrichment and sequencing, this chemistry enables high-resolution spatial mapping of RNAs across subcellular compartments.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1: Masked acylating agents for proximity labelling of biomolecules.

References

  1. Rhee, H. W. et al. Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging. Science 339, 1328–1331 (2013). This foundational article presents subcellular proteome mapping with the APEX enzyme.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Fazal, F. M. et al. Atlas of subcellular RNA localization revealed by APEX-Seq. Cell 178, 473–490 (2019). This article reports subcellular RNA proximity labelling with the APEX2 enzyme.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Wang, P. et al. Mapping spatial transcriptome with light-activated proximity-dependent RNA labeling. Nat. Chem. Biol. 15, 1110–1119 (2019). This article presents the light-based RNA proximity labelling method CAP-seq.

    Article  CAS  PubMed  Google Scholar 

  4. Engel, K. L. et al. Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. Nucleic Acids Res. 50, e24 (2022). This article presents the light-based RNA proximity labelling method Halo-seq.

    Article  CAS  PubMed  Google Scholar 

  5. Velema, W. A. & Kool, E. T. The chemistry and applications of RNA 2′-OH acylation. Nat. Rev. Chem. 4, 22–37 (2020). This review article describes the development and applications of RNA acylation chemistry.

    Article  CAS  PubMed  Google Scholar 

Download references

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

This is a summary of: Pani, S. et al. Bioorthogonal masked acylating agents for proximity-dependent RNA labelling. Nat. Chem. https://doi.org/10.1038/s41557-024-01493-1 (2024).

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Masked acid chlorides for proximity labelling of RNA. Nat. Chem. 16, 682–683 (2024). https://doi.org/10.1038/s41557-024-01492-2

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41557-024-01492-2

  • Springer Nature Limited

Navigation