Skip to main content
SpringerLink
Log in

Evidence against a genomic code for nucleosome positioning Reply to “Nucleosome sequence preferences influence in vivo nucleosome organization”

  • Correspondence
  • Published:

From Nature Structural & Molecular Biology

View current issue Submit your manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

References

  1. Segal, E. et al. Nature 442, 772–778 (2006).

    Article  CAS  Google Scholar 

  2. Kaplan, N. et al. Nature 458, 362–366 (2009).

    Article  CAS  Google Scholar 

  3. Zhang, Y. et al. Nat. Struct. Mol. Biol. 16, 847–852 (2009).

    Article  CAS  Google Scholar 

  4. Kaplan, N. et al. Nat. Struct. Mol. Biol. 17, 918–920 (2010).

    Article  CAS  Google Scholar 

  5. Struhl, K. Proc. Natl. Acad. Sci. USA 82, 8419–8423 (1985).

    Article  CAS  Google Scholar 

  6. Chen, W., Tabor, S. & Struhl, K. Cell 50, 1047–1055 (1987).

    Article  CAS  Google Scholar 

  7. Iyer, V. & Struhl, K. EMBO J. 14, 2570–2579 (1995).

    Article  CAS  Google Scholar 

  8. Sekinger, E.A., Moqtaderi, Z. & Struhl, K. Mol. Cell 18, 735–748 (2005).

    Article  CAS  Google Scholar 

  9. Stein, A., Takasuka, T.E. & Collings, C.K. Nucleic Acids Res. 38, 709–719 (2010).

    Article  CAS  Google Scholar 

  10. Drew, H.R. & Travers, A.A. J. Mol. Biol. 186, 773–790 (1985).

    Article  CAS  Google Scholar 

  11. Satchwell, S.C., Drew, H.R. & Travers, A.A. J. Mol. Biol. 191, 659–675 (1986).

    Article  CAS  Google Scholar 

  12. Kunkel, G.R. & Martinson, H.G. Nucleic Acids Res. 9, 6869–6888 (1981).

    Article  CAS  Google Scholar 

  13. Prunell, A. EMBO J. 1, 173–179 (1982).

    Article  CAS  Google Scholar 

  14. Visnapuu, M.L. & Greene, E.C. Nat. Struct. Mol. Biol. 16, 1056–1062 (2009).

    Article  CAS  Google Scholar 

  15. Peckham, H.E. et al. Genome Res. 17, 1170–1177 (2007).

    Article  CAS  Google Scholar 

  16. Harismendy, O. et al. Genome Biol. 10, R32 (2009).

    Article  Google Scholar 

  17. Horz, W. & Altenburger, W. Nucleic Acids Res. 9, 2643–2658 (1981).

    Article  CAS  Google Scholar 

  18. Weiner, A., Hughes, A., Yassour, M., Rando, O.J. & Friedman, N. Genome Res. 20, 90–100 (2010).

    Article  CAS  Google Scholar 

  19. Yuan, G.-C. et al. Science 309, 626–630 (2005).

    Article  CAS  Google Scholar 

  20. Mavrich, T.N. et al. Genome Res. 18, 1073–1083 (2008).

    Article  CAS  Google Scholar 

  21. Fedor, M.J., Lue, N.F. & Kornberg, R.D. J. Mol. Biol. 204, 109–127 (1988).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts, USA

    Yong Zhang & X Shirley Liu

  2. Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts, USA

    Zarmik Moqtaderi & Kevin Struhl

  3. Section of Molecular Biology, University of California, San Diego, La Jolla, California, USA

    Barbara P Rattner & James T Kadonaga

  4. Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, USA

    Ghia Euskirchen & Michael Snyder

Authors
  1. Yong Zhang
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Zarmik Moqtaderi
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Barbara P Rattner
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Ghia Euskirchen
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Michael Snyder
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. James T Kadonaga
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. X Shirley Liu
    View author publications

    You can also search for this author in PubMed Google Scholar

  8. Kevin Struhl
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Kevin Struhl.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zhang, Y., Moqtaderi, Z., Rattner, B. et al. Evidence against a genomic code for nucleosome positioning Reply to “Nucleosome sequence preferences influence in vivo nucleosome organization”. Nat Struct Mol Biol 17, 920–923 (2010). https://doi.org/10.1038/nsmb0810-920

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1038/nsmb0810-920

  • Springer Nature America, Inc.

This article is cited by

Search

Navigation