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Exploring genomic alteration in pediatric cancer using ProteinPaint

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Figure 1: Comprehensive visualization of sequence mutations, gene fusions and RNA expression using ProteinPaint.

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Acknowledgements

We thank J. Klco, P. Northcott and C. Mullighan for helpful suggestions. We thank the reviewers of this manuscript for suggestions of implementing new interface for custom data upload. This study was supported by the St. Jude Children's Research Hospital–Washington University Pediatric Cancer Genome Project, Cancer Center support grant P30 CA021765 from the US National Cancer Institute and the American Lebanese Syrian Associated Charities of St. Jude Children's Research Hospital.

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Authors and Affiliations

  1. Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA

    Xin Zhou, Michael N Edmonson, Mark R Wilkinson, Aman Patel, Gang Wu, Yu Liu, Yongjin Li, Zhaojie Zhang, Michael C Rusch, Matthew Parker, Jared Becksfort, James R Downing & Jinghui Zhang

  2. Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA

    James R Downing

Authors
  1. Xin Zhou
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  2. Michael N Edmonson
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  3. Mark R Wilkinson
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  4. Aman Patel
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  5. Gang Wu
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  6. Yu Liu
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  7. Yongjin Li
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  8. Zhaojie Zhang
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  9. Michael C Rusch
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  10. Matthew Parker
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  11. Jared Becksfort
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  12. James R Downing
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  13. Jinghui Zhang
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Corresponding author

Correspondence to Jinghui Zhang.

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The authors declare no competing financial interests.

Supplementary information

Supplementary Figures and Text

Supplementary Figures 1–8 and Supplementary Note. (PDF 4868 kb)

Supplementary Tutorial

Supplementary tutorial for ProteinPaint. (PDF 3710 kb)

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Zhou, X., Edmonson, M., Wilkinson, M. et al. Exploring genomic alteration in pediatric cancer using ProteinPaint. Nat Genet 48, 4–6 (2016). https://doi.org/10.1038/ng.3466

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