Complete and accurate annotation of gene function is an essential starting point for genome interpretation and a host of systems and synthetic biology endeavors. Detecting errors in existing annotation now has an important new tool.
References
Hsiao, T.L., Revelles, O., Chen, L., Sauer, U. & Vitkup, D. Nat. Chem. Biol. 6, 34–40 (2010).
Altschul, S.F. et al. Nucleic Acids Res. 25, 3389–3402 (1997).
Finn, R.D. et al. Nucleic Acids Res. 36, D281–D288 (2008).
Klimke, W. et al. Nucleic Acids Res. 37, D216–D223 (2009).
Murali, T.M., Wu, C.J. & Kasif, S. Nat. Biotechnol. 24, 1474–1475 (2006); author reply 24, 1475–1476 (2006).
Galperin, M.Y. & Koonin, E.V. Nat. Biotechnol. 18, 609–613 (2000).
Jansen, R. et al. Science 302, 449–453 (2003).
Godzik, A., Jambon, M. & Friedberg, I. Cell. Mol. Life Sci. 64, 2505–2511 (2007).
Zheng, Y., Szustakowski, J.D., Fortnow, L., Roberts, R.J. & Kasif, S. Genome Res. 12, 1221–1230 (2002).
Overbeek, R. et al. Nucleic Acids Res. 33, 5691–5702 (2005).
Roberts, R.J. PLoS Biol. 2, E42 (2004).
Author information
Authors and Affiliations
Corresponding authors
Rights and permissions
About this article
Cite this article
Kasif, S., Steffen, M. Biochemical networks: The evolution of gene annotation. Nat Chem Biol 6, 4–5 (2010). https://doi.org/10.1038/nchembio.288
Issue Date:
DOI: https://doi.org/10.1038/nchembio.288
- Springer Nature America, Inc.
This article is cited by
-
eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains
BMC Bioinformatics (2014)
-
Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms
Nature Reviews Microbiology (2013)