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Improved genome annotation for Zymomonas mobilis

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Acknowledgements

We thank A. Savidor for making his six-frame translation proteomics search scripts available, L. Goodwin (US DOE JGI) for management of plasmid sequencing and O. Chertkov (JGI–Los Alamos National Laboratory) for plasmid sequence improvement and finishing. Research sponsored in part by the Laboratory Directed Research and Development Program of ORNL, managed by UT-Battelle, LLC for the US Department of Energy under contract no. DE-AC05-00OR22725; the BioEnergy Science Center, a US DOE Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of Science; and the DOE JGI managed by the University of California, Lawrence Berkeley National Laboratory under contract no. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under contract no. DE-AC52-07NA27344 and Los Alamos National Laboratory under contract no. DE-AC02-06NA25396.

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Authors and Affiliations

  1. Biosciences Division Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

    Shihui Yang, Loren J Hauser, Miriam L Land, Gwo-Liang Chen, Dale A Pelletier, Dawn M Klingeman, Yun-Juan Chang & Steven D Brown

  2. BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

    Shihui Yang, Loren J Hauser, Miriam L Land, Chongle Pan, Dawn M Klingeman & Steven D Brown

  3. Department of Genetics & Biotechnology, University of Athens, Athens, Greece

    Katherine M Pappas, Vassili N Kouvelis & Milton A Typas

  4. Chemical Sciences Division Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

    Gregory B Hurst

  5. Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

    Chongle Pan & Nagiza F Samatova

Authors
  1. Shihui Yang
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  2. Katherine M Pappas
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  3. Loren J Hauser
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  4. Miriam L Land
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  5. Gwo-Liang Chen
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  6. Gregory B Hurst
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  7. Chongle Pan
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  8. Vassili N Kouvelis
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  9. Milton A Typas
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  10. Dale A Pelletier
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  11. Dawn M Klingeman
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  12. Yun-Juan Chang
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  13. Nagiza F Samatova
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  14. Steven D Brown
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Corresponding authors

Correspondence to Katherine M Pappas or Steven D Brown.

Supplementary information

Supplementary Text and Figures

Supplementary Fig. 1 (PDF 111 kb)

Supplemental Table 1

ZM4 differences. (HTM 830 kb)

Supplemental Table 2

ZM4 pseudogenes converted into full length CDS. (XLS 28 kb)

Supplemental Table 3

Newly described ZM4 chromosomal genes. (XLS 25 kb)

Supplemental Table 4

Gene-by-gene comparison or primary and ORNL annotations. (XLS 177 kb)

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Yang, S., Pappas, K., Hauser, L. et al. Improved genome annotation for Zymomonas mobilis. Nat Biotechnol 27, 893–894 (2009). https://doi.org/10.1038/nbt1009-893

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