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Preprocessing of oligonucleotide array data

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Figure 1: Graphical comparison of the capacity of four algorithms (MAS 5.0, PerfectMatch, RMA and GCRMA) to measure expression.

References

  1. Zhang, L., Miles, M.F. & Aldape, F.D. Nat. Biotechnol. 21, 818–821 (2003).

    Article  CAS  Google Scholar 

  2. Irizarry, R. et al. Biostatistics 4, 249–264 (2003).

    Article  Google Scholar 

  3. Lockhart, D. et al. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14, 1675–1680 (1996).

    Article  CAS  Google Scholar 

  4. Affymetrix Affymetrix Microarray Suite User Guide. Version 5 (Affymetrix, Santa Clara, CA, USA, 2001).

  5. Durbin, B.P., Hardin, J.S., Hawkins, D.M. & Rocke, D.M. Bioinformatics 18, S105–S110 (2002).

    Article  Google Scholar 

  6. Wu, Z. & Irizarry, R.A. Proceedings of RECOMB 2004, 98–106 (2004).

  7. Irizarry, R.A. et al. Nucleic Acids Research 31, e15 (2003).

    Article  Google Scholar 

  8. Hekstra, D., Taussig, A.R., Magnasco, M. & Naef, F. Nucleic Acids Res. 31, 1962–1968 (2003).

    Article  CAS  Google Scholar 

  9. Wu, Z., Irizarry, R.A., Gentleman, R., Murillo, F.M. & Spencer, F. A Model Based Background Adjustment for Oligonucleotide Expression Arrays. Technical Report (John Hopkins University, Department of Biostatistics Working Papers, Baltimore, MD, 2003).

    Google Scholar 

  10. Li, C. & Wong, W. Proc. Natl. Acad. Sci. USA, 98, 31–36 (2001).

    Article  CAS  Google Scholar 

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Authors and Affiliations

  1. Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, 615 North Wolfe Street, Baltimore, 21205, Maryland, USA

    Zhijin Wu & Rafael A Irizarry

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  1. Zhijin Wu
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  2. Rafael A Irizarry
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Wu, Z., Irizarry, R. Preprocessing of oligonucleotide array data. Nat Biotechnol 22, 656–658 (2004). https://doi.org/10.1038/nbt0604-656b

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