Mapping the vast quantities of short sequence fragments produced by next-generation sequencing platforms is a challenge. What programs are available and how do they work?
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Trapnell, C., Salzberg, S. How to map billions of short reads onto genomes. Nat Biotechnol 27, 455–457 (2009). https://doi.org/10.1038/nbt0509-455
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DOI: https://doi.org/10.1038/nbt0509-455
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