Abstract
Accurate prediction of electrostatic effects on catalytic activity is an essential component of protein design1–4. Site-directed mutagenesis of charged groups in subtilisin of Bacillus amyloliquefaciens has provided experimental measurements of electrostatic interactions which may be used to test such theoretical methods. The pKa of the histidine of the active site has been perturbed by +0.08 to –1.0 units by modifying one or two residues5–7. Electrostatic effects in proteins can be modelled by the algorithm of Warwicker and Watson, which uses classical electrostatics and considers both the charge position and the shape of the molecule8–10. Here we report that the algorithm can model several pKa shifts in subtilisin to fair accuracy.
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1. Rogers, N. K. Prog. Biophys. molec. BioL 48, 37-66 (1986). 2. Tarn, S. C. & Williams, R. J. P. Struct. Bond. 63, 103-151 (1985). 3. Matthew, J. B. et al CRC crit. Rev. Biochem. 18, 91-197 (1985). 4. Warshel, A. & Russell, S. T. Q. Rev. Biophys. 17, 283-422 (1984). 5. Thomas, P. G., Russell, A. J. & Fersht, A. R. Nature 318, 375-376 (1985). 6. Russell, A. J., Thomas, P. G. & Fersht, A. R. /. molec. Biol. 193, 803-813 (1987). 7. Russell, A. J. & Fersht, A. R. Nature 328, 496-500 (1987). 8. Warwicker, J. & Watson, H. C. /. molec. BioL 157, 671-679 (1982). 9. Rogers, N. K. & Sternberg, M. J. E. /. molec. Biol. 174, 527-542 (1984). 10. Rogers, N. K., Moore, G. R. & Sternberg, M. J. E. /. molec. Biol 182, 613-616 (1985). 11. Hopfinger, A. J. in Conformational Properties of Macromolecules 59-63 (Academic, New York, 1973). 12. Mehler, E. L. & Eichele, G. Biochemistry 23, 3887-3891 (1984). 13. Jones, T. A. J. appL Crystallogr. 11, 268-272 (1978). 14. Tanford, C. & Roxby, R. Biochemistry 11, 2192-2198 (1972). 15. Gilson, M. K. & Honig, B. H. Nature 330, 84-86 (1987).
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Sternberg, M., Hayes, F., Russell, A. et al. Prediction of electrostatic effects of engineering of protein charges. Nature 330, 86–88 (1987). https://doi.org/10.1038/330086a0
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DOI: https://doi.org/10.1038/330086a0
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