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Genetic Diversity and Relationships Among Siberian and Far Eastern Larches Inferred from RAPD Analysis

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Abstract

Genetic diversity of larches from six geographically distant regions, Tomsk, Irkutsk, Ulan-Ude (Siberia), and Blagoveshchensk, Khabarovsk, Yuzhno-Sakhalinsk (Far East) was examined by means of RAPD analysis. Tree DNA samples were compared using 457 RAPD loci (97% of which were polymorphic), identified with 17 primers of random sequences. In the samples examined, 32 to 49% of the genes were in heterozygous state, mean expected heterozygosity (H exp) varied from 0.1373 to 0.1891, and the genetic distances (D N) for different sample pairs varied from 0.0361 to 0.1802. The main population parameters were determined for Larix sibirica Ledeb., L. gmelinii(Rupr.) Rupr., and L. kamtschatica (Rupr.) Carr. Analysis of the genetic relationships showed that L. kamtschatica was characterized by highest genetic differentiation from the other larches examined, while larches from Primorskii krai were genetically close toL. sibirica.

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REFERENCES

  1. Dylis, N.V., Listvennitsa Vostochnoi Sibiri i Dal'nego Vostoka (Larch of Eastern Siberia and the Russian Far East), Moscow: Nauka, 1961.

    Google Scholar 

  2. Kolesnikov, B.P., To the Taxonomy and Developmental History of Larches of the Series Pauciseriales Patshke, in Materialy po istorii flory i rastitel'nosti SSSR (Materials on the History of Flora and Vegetation of the Soviet Union), Moscow: Akad. Nauk SSSR, 1946, no. 2, pp. 21-86.

    Google Scholar 

  3. Bobrov, E.G., Istoriya i sistematika listvennits (The History and Taxonomy of Larches), Leningrad: Nauka, 1972.

    Google Scholar 

  4. Kabanov, N.E., Khvoinye derev'ya i kustarniki Dal'nego Vostoka (Coniferous Trees and Bushes of the Russian Far East), Moscow: Nauka, 1977.

    Google Scholar 

  5. Kruklis, M.V. and Milyutin, L.I., Listvennitsa Chekanovskogo (Chekanovsky Larch), Moscow: Nauka, 1977.

    Google Scholar 

  6. Shurkhal, A.V., Podogas, A.V., Semerikov, V.L., and Zhivotovsky, L.A., Allozyme Polymorphism in Siberian Larch Larix sibirica, Russ. J. Genet., 1989, vol. 25,no. 10, pp. 1899-1901.

    Google Scholar 

  7. Milyutin, L.I., Muratova, E.N., and Larionova, A.Ya., Genetic Taxonomic Analysis of Populations of Siberian and Sukachev Larches, Lesovedenie, 1993, no. 5, pp. 55-63.

    Google Scholar 

  8. Semerikov, V.L. and Matveev, A.V., Analysis of the Genetic Variation of Siberian Larch Larix sibirica Ldb. by Isozyme Loci, Russ. J. Genet., 1995, vol. 31,no. 8, pp. 1107-1113.

    Google Scholar 

  9. Abaimov, A.P. and Koropachinskii, I.P., Listvennitsy Gmelina i Kayandera (Gmelin and Kayander Larches), Novosibirsk: Nauka, 1984.

    Google Scholar 

  10. Potenko, V.V. and Razumov, P.N., Genetic Variation and Population Structure of Dahurian Larch in the Khabarovsk Krai, Lesovedenie, 1996, no. 5, pp. 11-18.

    Google Scholar 

  11. Timer'yanov, A.Sh., Shigapov, Z.Kh., and Yanbaev, Yu.A., Genetic Variability in Larch Larix sukaczewii Dyl. in the Southern Urals: I. The Mechanism of Genetic Control of Isozyme Systems, Russ. J. Genet., 1994, vol. 30,no. 9, pp. 1243-1247.

    Google Scholar 

  12. Timer'yanov, A.Sh., Starova, N.V., and Bakhtiyarova, R.M., Genetic Variability in Larch Larix sukaczewii Dyl. in the Southern Urals: II. Levels of Isozyme Variation in Natural Populations, Russ. J. Genet., 1996, vol. 32,no. 2, pp. 235-239.

    Google Scholar 

  13. Shigapov, Z.Kh., Putenikhin, V.P., Shigapova, A.I., and Urazbakhtina, K.A., Genetic Structure of the Ural Populations of Larix sukaczewii Dyl., Russ. J. Genet., 1998, vol. 34,no. 1, pp. 54-62.

    Google Scholar 

  14. Voroshilov, V.N., Opredelitel' rastenii sovetskogo Dal'nego Vostoka (A Handbook on Identification of Plants of the Russian Far East), Moscow: Nauka, 1982, p. 33.

    Google Scholar 

  15. Starikov, G.F., Lesa severnoi chasti Khabarovskogo kraya (Forests of the Northern Region of the Khabarovsk Krai), Khabarovsk: Khabarovsk. Knizhn. Izd., 1961.

    Google Scholar 

  16. Gukov, G.V., Rekomendatsii po vedeniyu khozyaistva v listvennichnykh lesakh Sikhote-Alinya (Recommendations on Larch Forestry in Sikhote-Alin'), Vladivostok, 1976.

  17. Sosudistye rasteniya sovetskogo Dal'nego Vostoka (Vascular Plants of the Soviet Far East), vol. 4, Kharkevich, S.S., Ed., Leningrad: Nauka, 1989, pp. 17-20.

    Google Scholar 

  18. Goncharenko, G.G. and Silin, A.E., To the Genetic Variation and Differentiation of Kuril Larch Larix kurilensis Mayr. and Japanese Larch Larix kaempferi Sarg., Dokl. Akad. Nauk, 1997, vol. 354,no. 6, pp. 835-838.

    Google Scholar 

  19. Semerikov, V.L., Semerikov, L.F., and Lascoux, M., Intra-and Interspecific Allozyme Variability in Eurasian Larix Mill. Species, Heredity, 1999, vol. 82, pp. 193-204.

    Google Scholar 

  20. Semerikov, V.L. and Lascoux, M., Genetic Relationship among Eurasian and American Larix Species Based on Allozymes, Heredity, 1999, vol. 83, pp. 62-70.

    Google Scholar 

  21. Goncharenko, G.G., Genosistematika i evolyutsionnaya filogeniya lesoobrazuyushchikh khvoinykh Palearktiki (Gene Systematics and Evolutionary Phylogeny of Palearctic Forest-Forming Conifers), Minsk: Tekhnologiya, 1999.

    Google Scholar 

  22. Isabel, N., Tremblay, L., Michaud, M., et al., RAPDs as an Aid to Evaluate the Genetic Integrity of Somatic Embryogenesis-Derived Populations of Picea mariana (Mill.) B.S.P., Theor. Appl. Genet., 1993, vol. 86, pp. 81-87.

    Google Scholar 

  23. Isabel, N., Beaulieu, J., and Bousquet, J., Complete Congruence between Gene Diversity Estimates Derived from Genotypic Data at Enzyme and Random Amplified Polymorphic DNA Loci in Black Spruce, Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 6369-6373.

    Google Scholar 

  24. Isabel, N., Beaulieu, J., Theriault, Ph., and Bousquet, J., Direct Evidence for Biased Gene Diversity Estimates from Dominant Random Amplified Polymorphic DNA (RAPD) Fingerprints, Mol. Ecol., 1999, vol. 8, pp. 477-483.

    Google Scholar 

  25. Altukhov, Yu.P. and Abramov, A.B., Species-Specific Random Amplified Monomorphic DNA, Russ. J. Genet., vol. 36,no. 12, pp. 1411-1417.

  26. Nkongolo, K.K., Michael, P., and Gratton, W.S., Identification and Characterization of RAPD Markers Inferring Genetic Relationships among Pine Species, Genome, 2002, vol. 45,no. 1, pp. 51-58.

    Google Scholar 

  27. Lee, S.-W., Ledig, F.T., and Johnson, D.R., Genetic Variations at Allozyme and RAPD Markers in Pinus longaeva (Pinaceae) of the White Mountains, California, Am. J. Bot., 2002, vol. 89,no. 4, pp. 566-577.

    Google Scholar 

  28. Karhu, A., Dieterich, J.-H., and Savolainen, O., Rapid Expansion of Microsatellite Sequence in Pines, Mol. Biol. Evol., 2000, vol. 17,no. 2, pp. 259-265.

    Google Scholar 

  29. Khasa, P.D., Newton, C.H., Rahman, M.H., et al., Isolation, Characterization, and Inheritance of Microsatellite Loci in Alpine Larch and Western Larch, Genome, 2000, vol. 43,no. 3, pp. 439-448.

    Google Scholar 

  30. Gugerli, F., Senn, J., Anzidei, M., et al., Chloroplast Microsatellites and Mitochondrial nad1 Intron 2 Sequences Indicate Congruent Phylogenetic Relationships among Swiss Stone Pine (Pinus cembra), Siberian Stone Pine (Pinus sibirica), and Siberian Dwarf Pine (Pinus pumila), Mol. Ecol., 2001, vol. 10,no. 6, pp. 1489-1497.

    Google Scholar 

  31. Gernandt, D.S. and Liston, A., Internal Transcribed Spacer Region Evolution in Larix and Pseudotsuga (Pinaceae), Am. J. Botany, 1999, vol. 86, pp. 711-723.

    Google Scholar 

  32. Kozyrenko, M.M., Artyukova, E.V., Reunova, G.D., et al., Estimation of the Genetic Variation and the Population Structure of Larch in Primorye, Lesovedenie (in press).

  33. Kozyrenko, M.M., Artyukova, E.V., Lauve, L.S., et al., Genetic Variability of Ginseng Panax ginseng Callus Lines, Russ. J. Biotechnology, 2001, no. 1, pp. 44-51.

    Google Scholar 

  34. Lynch, M. and Milligan, B.G., Analysis of Population Structure with RAPD Markers, Mol. Ecol., 1994, vol. 3, pp. 91-99.

    Google Scholar 

  35. Miller, M.P., Tools for Population Genetic Analysis (TFPGA) 1.3: A Windows Program for the Analysis of Allozyme and Molecular Population Genetic Data, computer software distributed by author, 1997.

  36. Yeh, F.C. and Boyle, T.J.B., Population Genetic Analysis of Co-dominant and Dominant Markers and Quantitative Traits, Belgian J. Bot., 1997, vol. 129, p. 157.

    Google Scholar 

  37. Van de Peer, Y. and De Wachter, R., TREECON for Windows: A Software Package for the Construction and Drawing of Evolutionary Trees for the Microsoft Windows Environment, Comput. Appl. Biosci., 1994, vol. 10, pp. 569-570.

    Google Scholar 

  38. Sazonova, I.Yu., Kozyrenko, M.M., Artyukova, E.V., et al., DNAs from Various Organs of Far-Eastern Larches and Their Suitability for RAPD Analysis, Izv. Ross. Akad. Nauk, Ser. Biol., 2001, no. 2, pp. 243-248.

    Google Scholar 

  39. Potenko, V.V. and Velikov, A.V., Preservation of Genetic Diversity in Conifers of the Russian Far East, Lesa i lesoobrazovatel'nyi protsess na Dal'nem Vostoke: Materialy Mezhdunarodnoi konferentsii (Forests and Forest Formation in the Russian Far East: Proc. Int. Conf.), Vladivostok: Dal'nauka, 1999, pp. 206-207.

    Google Scholar 

  40. Hamrick, J.L., Godt, M.W., and Sherman-Broyles, S.L., Factors Influencing Levels of Genetic Diversity in Woody Plant Species, New Forest, 1992, no. 6, pp. 95-124.

    Google Scholar 

  41. Vas'kovskii, A.P., A Brief Essay on the Vegetation, Climate, and Chronology of the Quaternary in the Upper Stretches of the Rivers Kolyma and Indigirka and the Northern Coast of the Sea of Okhotsk, Lednikovyi period na territorii Evropeiskoi chasti SSSR i Sibiri (The Glacial Period in the European Part of the Soviet Union and in Siberia), Moscow: Mosk. Gos. Univ., 1959, pp. 510-556.

    Google Scholar 

  42. Blokhina, N.I., A New Fossil Larch Species (by Wood) and the Origin of Siberian and Dahurian Larches, Komarovskie chteniya (Komarov Course of Lectures), issue 32, Vladivostok: Dal'nevost. Nauchn. Tsentr Akad. Nauk SSSR, 1985, pp. 3-13.

    Google Scholar 

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Kozyrenko, M.M., Artyukova, E.V., Reunova, G.D. et al. Genetic Diversity and Relationships Among Siberian and Far Eastern Larches Inferred from RAPD Analysis. Russian Journal of Genetics 40, 401–409 (2004). https://doi.org/10.1023/B:RUGE.0000024978.25458.f7

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