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A Comparison of Simulated Particle Fluxes Using NEMURO and Other Ecosystem Models in the Western North Pacific

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Abstract

JGOFS has revealed the importance of marine biological activity to the global carbon cycle. Ecological models are valuable tools for improving our understanding of biogeochemical cycles. Through a series of workshops, the North Pacific Marine Science Organization (PICES) developed NEMURO (North Pacific Ecosystem Model Understanding Regional Oceanography) a model, specifically designed to simulate the lower trophic ecosystem in the North Pacific Ocean. Its ability to simulate vertical fluxes generated by biological activities has not yet been validated. Here compare NEMURO with several other lower trophic level models of the northern North Pacific. The different ecosystem models are each embedded in a common three-dimensional physical model, and the simulated vertical flux of POM and the biomass of phytoplankton are compared. The models compared are: (1) NEMURO, (2) the Kishi and Nakata Model (Kishi et al., 1981), (3) KKYS (Kawamiya et al., 1995, 2000a, 2000b), and (4) the Denman model (Denman and Peña, 2002). With simple NPZD models, it is difficult to describe the production of POM (Particulate Organic Matter) and hence the simulations of vertical flux are poor. However, if the parameters are properly defined, the primary production can be well reproduced, even though none of models we used here includes iron limitation effects. On the whole, NEMURO gave a satisfactory simulation of the vertical flux of POM in the northern North Pacific.

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References

  • Aita-Noguchi-Noguchi, M., Y. Yamanaka and M. J. Kishi (2003): Effect of ontogenetic vertical migration of zooplankton on annual primary production-Using NEMURO embedded in General Circulation Model-. Fish. Oceanogr., 12, 284–290.

    Article  Google Scholar 

  • Chai, F., M. Jiang, R. T. Barber, R. C. Dugdale and Y. Chao (2003): Interdecadal variation of the transition zone chlorophyll front: A physical-biological model simulation between 1960 and 1990. J. Oceanogr., 59, 461–475.

    Article  Google Scholar 

  • da Silva, A. M., C. C. Yong and S. Levitus (1994): Atlas of Surface Marine Data. NOAA Atlas NESDIS, US Department of Commerce, Washington, D.C.

    Google Scholar 

  • Denman, K. L. and A. E. Garget (1995): Biological-physical interaction in the upper ocean: The role of vertical and small scale transport processes. Ann. Rev. Fluid Mech., 27, 225–255.

    Google Scholar 

  • Denman, K. L. and M. A. Peña (2002): The response of two coupled one-dimensional mixed layer/planktonic ecosystem models to climate change in the NE subarctic Pacific Ocean. Deep-Sea Res. II, 49, 5739–5757.

    Article  Google Scholar 

  • Doney, S. C. (1999): Major challenges confronting marine biogeochemical modeling. Global Biogeochem. Cycles, 13, 705–714.

    Article  Google Scholar 

  • Eslinger, D. L., M. B. Kashiwai, M. J. Kishi, M. B. A. Megrey, D. M. Ware and F. E. Werner (2000): Model task team workshop report. PICES Sci. Rep., 15, 1–77.

    Google Scholar 

  • Evans, G. T. and V. Garçon (1997): One-dimensional models of water column biogeochemistry, Report of a workshop held in Toulouse, France. JGOFS Report, 23, 85 pp.

  • Franks, P. J. S. (1995): Coupled physical-biological models in oceanography. Rev. Geophys., Suppl., 1177–1187.

  • Frost, B. W. and M. J. Kishi (1999): Ecosystem dynamics in the eastern and western gyres of Subarctic Pacific-a review of lower trophic level modeling. Prog. Oceanogr., 43, 317–333.

    Article  Google Scholar 

  • Fujii, M., Y. Nojiri, Y. Yamanaka and M. J. Kishi (2002): A one dimensional ecosystem model applied to time-series Station KNOT. Deep-Sea Res. II, 49, 5441–5461.

    Article  Google Scholar 

  • Goes, J. I., T. Saino, H. Oaku, J. Ishizaka, C. S. Wong and Y. Nojiri (2000): Basin scale estimate of sea surface nitrate and new production from remotely sensed sea surface temperature and chlorophyll. Geophys. Res. Lett., C27(9), 1263–1266.

    Article  Google Scholar 

  • Honda, M. C., K. Imai, Y. Nojiri, F. Hoshi, T. Sugawara and M. Kusakabe (2002): The biological pump in the northwestern North Pacific based on fluxes and major components of particulate matter obtained by sediment-trap experiments (1997-2000). Deep-Sea Res. II, 49, 5595–5625.

    Article  Google Scholar 

  • Imai, K., Y. Nojiri, N. Tsurushima and T. Saino (2002): Time series of seasonal variation of primary productivity at station KNOT (44?N, 155?E) in the sub-arctic western North Pacific. Deep-Sea Res. II, 49, 5395–5408.

    Article  Google Scholar 

  • Ito, S., M. J. Kishi, Y. Kurita, Y. Oozeki, Y. Yamanaka, B. Megrey and F. E. Werner (2003): A fish bioenergetic model application to Pacific saury coupled with a lower trophic ecosystem model. Fish. Oceanogr. (in press).

  • Kawamiya, M. (2002): Numerical model approaches to address recent problems on pelagic ecosystems. J. Oceanogr., 58, 365–378.

    Article  Google Scholar 

  • Kawamiya, M., M. J. Kishi, Y. Yamanaka and N. Suginohara (1995): An ecological-physical coupled model applied to Station Papa. J. Oceanogr., 51, 635–664.

    Article  Google Scholar 

  • Kawamiya, M., M. J. Kishi and N. Suginohara (2000a): An ecosystem model for the North Pacific embedded in a general circulation model, Part I: Model description and characteristics of spatial distributions of biological variables. J.Mar. Sys., 25, 129–157.

    Article  Google Scholar 

  • Kawamiya, M., M. J. Kishi and N. Suginohara (2000b): An ecosystem model for the North Pacific embedded in a general circulation model, Part II: Mechanisms forming seasonal variations of chlorophyll. J. Mar. Sys., 25, 159–178.

    Article  Google Scholar 

  • Kishi, M. J., K. Nakata and K. Ishikawa (1981): Sensitivity analysis of a coastal marine ecosystem, J. Oceanogr. Soc. Japan, 37, 120–134.

    Article  Google Scholar 

  • Kishi, M. J., H. Motono, M. Kashiwai and A. Tsuda (2001): An ecological-physical coupled model with ontogenetic vertical migration of zooplankton in the northwestern Pacific. J. Oceanogr., 57, 499–507.

    Article  Google Scholar 

  • Kuroda, H. and M. J. Kishi (2003): A data assimilation technique applied to estimate parameters for the NEMURO marine ecosystem model. Ecological Modelling (in press).

  • Levitus, S. and T. P. Boyer (1994): NOAA Atlas NESDIS 3, 4: World Ocean Atlas 1994, Vol. 3, 4. Technical Report, NODC.

  • Mackas, D. and A. Tsuda (1999): Mesozooplankton in the eastern and western subarctic Pacific: community structure, seasonal life histories, and interannual variability. Prog. Oceanogr., 43, 335–363.

    Article  Google Scholar 

  • Megrey, B. A. and M. J. Kishi (2002): Model/REX workshop to develop a marine ecosystem model of the north Pacific Ocean including pelagic fishes. PICES Sci. Rep., 20, 77–176.

    Google Scholar 

  • Miller, C. B. and M. J. Clemons (1988): Revised life history analysis for large grazing copepods in the subarctic Pacific Ocean. Prog. Oceanogr., 20, 293–313.

    Article  Google Scholar 

  • Orlanski, I. (1976): A simple boundary condition for unbounded hyperbolic flows. J. Comput. Phys., 21, 251–269.

    Article  Google Scholar 

  • Pacanowski, R. C. and S. G. H. Philander (1981): Parameterization of vertical mixing in numerical models of tropical oceans. J. Phys. Oceanogr., 11, 1443–1451.

    Article  Google Scholar 

  • Sathyendranath, S., T. Platt, E. P. W. Horne, W. G. Harrison, R. Ulloa, R. Outerbridge and N. Hoepffner (1991): Estimation of new production in the ocean by compound remote sensing. Nature, 353, 129–133.

    Article  Google Scholar 

  • Smith, L., Y. Yamanaka and M. J. Kishi (2003): Attempting consistent simulations of Stn. ALOHA with a multi-element ecosystem model. J. Oceanogr. (submitted).

  • Totterdell, I. J. (1993): An unnoted bibliography of marine biological models. p. 317–339. In Towards a Model of Ocean Biogeochemical Processes, ed. by G. T. Evans and M. J. R. Fasham, Springer-Verlag, Berlin.

  • Yamanaka, Y., N. Yoshie, M. Fujii, M. N. Aita-Noguchi and M. J. Kishi (2003): An ecosystem model coupled with nitrogen-silicon-carbon cycles applied to station A-7 in the Northwestern Pacific. J. Oceanogr. (in press).

  • Yoshie, N., Y. Yamanaka, M. J. Kishi and H. Saito (2003): One dimensional ecosystem model simulation of the effects of vertical dilution by the winter mixing on the spring diatom bloom. J. Oceanogr., 59, 563–571.

    Article  Google Scholar 

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Kishi, M.J., Okunishi, T. & Yamanaka, Y. A Comparison of Simulated Particle Fluxes Using NEMURO and Other Ecosystem Models in the Western North Pacific. Journal of Oceanography 60, 63–73 (2004). https://doi.org/10.1023/B:JOCE.0000038319.89808.ef

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  • DOI: https://doi.org/10.1023/B:JOCE.0000038319.89808.ef

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