Abstract
An assay for the detection of Strawberry vein banding virus (SVBV) in Fragaria spp. based on nucleic acid sequence based amplification (NASBA) and real-time detection using molecular beacons (real-time NASBA) is described. This assay was compared both with biological indexing, the current method for certification of SVBV, and a newly optimised PCR-based detection method. Performance of the assay was tested on three SVBV isolates in Fragaria indicator plants and 317 field strawberries from five European countries. The assay was shown to be SVBV-specific, testing negative for other common aphid-borne strawberry viruses. The virus was detected in purified total RNA preparations diluted a millionfold, which is an amount equivalent to ∼1 ng of fresh material. The real-time NASBA method developed here offers the potential of a fast, sensitive and reliable approach for the routine diagnosis of strawberry stock material.
Similar content being viewed by others
References
Bolton AT (1974) Effects of three virus diseases and their combination on fruit yield of strawberries. Canadian Journal of Plant Science 54: 271-275
Compton J (1991) Nucleic acid sequence-based amplification. Nature 350: 91-92
Converse RH (1992) Modern approaches to strawberry virus research. Acta Horticulturae 308: 19-30
Darke BM, Jackson SK, Hanna SM and Fox JD (1998) Detection of human TNF-alpha mRNA by NASBA. Journal of Immunological Methods 212: 19-28
Frazier NW and Converse RF (1980) Strawberry Vein Banding Virus. Description of Plant Viruses No. 219, CMI and AAB, Kew, Surrey, England
Frazier NW and Morris TJ (1987) Strawberry vein banding. In: Converse RH (ed) Agriculture Handbook No. 631. Virus Diseases of Small Fruits (pp 16-20) Department of Agriculture, D.C.US. Washington
Heim A and Schumann J (2002) Development and evaluation of a nucleic acid sequence based amplification (NASBA) protocol for the detection of enterovirus RNA in cerebrospinal fluid samples. Journal of Virological Methods 103: 101-107
Honetšlegrová J, Mráz I and Špak J (1995) Detection and isolation of Strawberry vein banding virus in the Czech Republic. Acta Horticulturae 385: 29-32
Jean J, Blais B, Darveau A and Fliss I (2001) Detection of hepatitis A virus by the nucleic acid sequence-based amplification technique and comparison with reverse transcription-PCR. Applied and Environmental Microbiology 67: 5593-5600
Jean J, Burton B, Darveau A and Fliss I (2002) Simultaneous detection and identification of hepatitis A virus and rotavirus by multiplex nucleic acid sequence-based amplification (NASBA) and microtiter plate hybridization system. Journal of Virological Methods 105: 123-132
Kievits T, van Gemen B, van Strijp D, Schukkink R, Dircks M, Adriaanse H, Malek L, Sooknanan R and Lens P (1991) NASBA isothermal enzymatic in vitro nucleic acid amplification optimized for the diagnosis of HIV-1 infection. Journal of Virological Methods 35: 273-286
Klerks MM, Leone G, Lindner JL, Schoen CD and van den Heuvel JFJM (2001a) Rapid and sensitive detection of Apple stem pitting virus in apple trees through RNA amplification and probing with fluorescent molecular beacons. Phytopathology 91: 1085-1091
Klerks MM, Leone G, Verbeek M, van den Heuvel JFJM and Schoen CD (2001b) Development of a multiplex AmpliDet RNA for the simultaneous detection of Potato leafroll virus and Potato virus Y in potato tubers. Journal of Virological Methods 93: 115-125
Lawson RH, Hearon SS and Civerolo EL (1977) Carnation Etched Ring Virus. Description of Plant Viruses No. 182, CMI and AAB, Kew, Surrey, England
Leone G, van Schijndel H, van Gemen B, Kramer FR and Schoen CD (1998) Molecular beacon probes combined with amplification by NASBA enable homogeneous, real-time detection of RNA. Nucleic Acids Research 26: 2150-2155
Marusawa H, Uemoto S, Hijikata M, Ueda Y, Tanaka K, Shimotohno K and Chiba T (2000) Latent hepatitis B virus infection in healthy individuals with antibodies to hepatitis B core antigen. Hepatology 31: 488-495
Mason AL, Xu LZ, Guo LS, Kuhns M and Perrillo RP (1998) Molecular basis for persistent hepatitis B virus infection in the liver after clearance of serum hepatitis B surface antigen. Hepatology 27: 1736-1742
Mráz I, Petrzik K, Fránová-Honetšlegrová J and Šíp M (1997) Detection of strawberry vein banding virus by polymerase chain reaction and dot blot hybridization. Acta virologica 1: 241-242
Mráz I, Petrzik K, Šíp M and Fránová-Honetšlegrová J (1998) Variability in coat protein sequence homology among American and European sources of strawberry vein banding virus. Plant Disease 82: 544-546
Mráz I, Petrzik K, Chvalová D, Šíp M and Fránová J (1999) Experience with testing of strawberry vein banding virus in strawberries byPCRand dot blot hybridization. Journal of Plant Disease and Protection 106: 231-236
OEPP/EPPO (1978) EPPO data sheets on quarantine organisms No. 01. Strawberry vein banding virus. Bulletin OEPP/EPPO Bulletin 8
Petrzik K, Mráz I and Dulič-Markovič I (1998a) Quarantine strawberry vein banding virus firstly detected in Slovakia and Serbia. Acta Virologica 42:87-89
Petrzik K, Beneš V, Mráz I, Fránová-Honetšlegrová J, Ansorge W and Špak J (1998b) Strawberry vein banding virus-definitive member of the genus Caulimovirus. Virus Genes 16: 303-305
Pooggin MM, Futterer J, Skryabin KG and Hohn T (1999) A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetro viruses. Journal of General Virology 80: 2217-2228
Shepherd RJ (1981) Cauliflower Mosaic Virus. Description of Plant Viruses No. 243, CMI and AAB, Kew, Surrey, England
Stenger DC, Mullin RH and Morris TJ (1988) Isolation, molecular cloning and detection of strawberry vein banding virus DNA. Phytopathology 78: 154-159
Thompson JR, Wetzel S, Klerks MM, Vašková D, Schoen CD, Špak J and JelkmannW (2003) Multiplex RT-PCR detection of four aphid-borne strawberry viruses in Fragaria spp. in combination with a plant mRNA specific internal control. Journal of Virological Methods 111: 85-93
Tyagi S and Kramer FR (1996) Molecular beacons: Probes that fluoresce upon hybridization. Nature Biotechnology 14: 303-308
van der Vliet GM, Schukkink RA, van Gemen B, Schepers P and Klatser PR (1993) Nucleic acid sequence-based amplification (NASBA) for the identification of mycobacteria. Journal of General Microbiology 139: 2423-2429
Voisset C, Mandrand B and Paranhos-Baccalà G (2000) RNA amplification technique, NASBA, also amplifies homologous plasmid DNA in non-denaturing conditions. BioTechniques 29: 236-240
Yates S, Penning M, Goudsmit J, Frantzen I, van de Weijer B, van Strijp D and van Gemen B (2001) Quantitative detection of hepatitis B virus DNA by real-time nucleic acid sequencebased amplification with molecular beacon detection. Journal of Clinical Microbiology 39: 3656-3665
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Vašková, D., Špak, J., Klerks, M. et al. Real-time NASBA for Detection of Strawberry Vein Banding Virus. European Journal of Plant Pathology 110, 213–221 (2004). https://doi.org/10.1023/B:EJPP.0000015378.27255.12
Issue Date:
DOI: https://doi.org/10.1023/B:EJPP.0000015378.27255.12