Skip to main content
Log in

Population Structure of Alaskan Shortraker Rockfish, Sebastes borealis, Inferred from Microsatellite Variation

  • Published:
Environmental Biology of Fishes Aims and scope Submit manuscript

Abstract

Alaskan shortraker rockfish population structure was analyzed by examining allelic variation at eight microsatellite loci. Samples were collected along the continental shelf and upper slope from the south end of Baranof Island to the western Aleutian Islands, and collections were pooled into eight geographically distinct groups. An exact test of homogeneity indicated population structure (p < 0.0006) among groups. The proportion of the total variation that was attributable to divergence among populations (θ = 0.0014) was not statistically significant, and no evidence of a geographic cline of structure was detected. Finer scale analyses that compared adjacent collections indicated that the collection from the southern end of the range differed from all remaining collections at three loci. Structure related to geographic location was detected by partitioning the variation among populations. The size distributions of shortraker rockfish varied among collections from east to west. The size differences may reflect divergent oceanographic and biological factors acting on populations that have restricted migration and movement. Alternatively, if there is substantial movement accompanied by lengthy reverse migration to natal grounds, the size differences may be related to ages of cohorts that are differentially distributed along the Pacific Rim. Further biological information including size, age composition, and age of maturity data, as well as information on other life history characteristics will be required to explain shortraker rockfish population structure.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Ackley, D.R. & J. Heifetz. 2001. Fishing practices under maximum retainable bycatch rates in Alaska's groundfish fisheries. Alaska Fish. Res. Bull. 8: 22–44.

    Google Scholar 

  • Cavalli-Sforza, L.L. & A.W.F. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Evolution 21: 550–570.

    Google Scholar 

  • Geiger, H.J., W.W. Smoker, L.A. Zhivotovsky & A.J. Gharrett. 1999. Variability of family size and marine survival in pink salmon (Oncorhynchus gorbuscha) has implications for conservation biology and human use. Can. J. Fish. Aquat. Sci. 54: 2684–2690.

    Google Scholar 

  • Hedgecock, D. 1994. Does variance in reproductive success limit effective population sizes of marine organisms? pp. 122–134. In: A.R. Beaumont (ed.) Genetics and Evolution of Aquatic Organisms, Chapman & Hall, London.

    Google Scholar 

  • Kendall, A.W., Jr. 1991. Systematics and identification of larvae and juveniles of the genus Sebastes. Environ. Biol. Fish. 30: 173–190.

    Article  Google Scholar 

  • Love, M.S., M.H. Carr & L.J. Haldorson. 1991. The ecology of substrate-associated juveniles of the genus Sebastes. Environ. Biol. Fish. 30: 225–243.

    Article  Google Scholar 

  • Lunsford, C.R. 1999. Distribution patterns and reproductive aspects of Pacific ocean perch (Sebastes alutus) in the Gulf of Alaska. M.S. Thesis, University of Alaska Fairbanks, AK. 145 pp.

    Google Scholar 

  • Malécot, G. 1950. Quelques schémas probabilistes sur la variabilité des populations naturelles. Annales de l'Université de Lyon Sciences, Section A 13: 37–60.

    Google Scholar 

  • Manly, B.F.J. 1985. The Statistics of Natural Selection on Animal Populations, Chapman & Hall, London & New York. 475 pp.

    Google Scholar 

  • Mantel, N.A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209–220.

    CAS  Google Scholar 

  • Mason, J.E. 1998. Declining rockfish lengths in the Monterey Bay, California, recreational fishery, 1959–1994. Mar. Fish. Rev. 60: 15–28.

    Google Scholar 

  • McDermott, S.F. 1994. Reproductive Biology of Rougheye and Shortraker Rockfish, Sebastes aleutianus and Sebastes borealis. M.S. Thesis, University of Washington, Seattle, WA. 76 pp.

    Google Scholar 

  • Moles, A., J. Heifetz & D.C. Love. 1998. Metazoan parasites as potential markers for selected Gulf of Alaska rockfish. Fish. Bull. 96: 912–916.

    Google Scholar 

  • Moser, G.H. & G.W. Boehlert. 1991. Ecology of planktonic larvae and juveniles of the genus Sebastes. Environ. Biol. Fish. 30: 203–224.

    Article  Google Scholar 

  • Munk, K.M. 2001. Maximum Ages of groundfish in waters off Alaska and British Columbia and considerations of age determination. Alaska Fish. Res. Bull. 8: 12–21.

    Google Scholar 

  • Ohta, T. 1982. Linkage disequilibrium due to random genetic drift in finite subdivided populations. Proc. Natl Acad. Sci. U.S.A. 79: 1940–1944.

    Google Scholar 

  • Orlov, A.M. 2001. Ocean current patterns and aspects of life history of some Northwestern Pacific scorpaenids. pp. 161–184. In: G.H. Kruse, N. Bez, A. Booth, M.W. Dorn, S. Hills, R.N. Lipcius, D. Pelletier, C. Roy, S.J. Smith & D. Witherell (ed.) Spatial Processes and Management of Marine Populations. Pub. No. AK-SG-01-02. University of Alaska Sea Grant College Program, Fairbanks, AK.

    Google Scholar 

  • Raymond, M. & F. Rousset. 1995a. GENEPOP (version 3.2a): Population genetics software for exact tests and ecumenicism. J. Hered. 86: 248–249.

    Google Scholar 

  • Raymond, M. & F. Rousset. 1995b. An exact test for population differentiation. Evolution 49: 1280–1283.

    Google Scholar 

  • Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution 43: 223–225.

    Google Scholar 

  • Rocha-Olivares, A. & R.D. Vetter. 1999. Effects of oceanographic circulation on the gene flow, genetic structure, and phylogeography of the rosethorn rockfish (Sebastes Helvomaculatus). Can. J. Fish. Aquat. Sci. 56: 803–813.

    Article  Google Scholar 

  • Roques, S., P. Duchesne & L. Bernatchez. 1999. Potential of microsatellites for individual assignment: The North Atlantic redfish (genus Sebastes) species complex as a case study. Mol. Ecol. 8: 1703–1717.

    Article  CAS  Google Scholar 

  • Sankoh, A.J., M.F. Huque & S.D. Dubey. 1997. Some comments on frequently used multiple endpoint adjustments methods in clinical trials. Stat. Med. 16: 2529–2542.

    Article  CAS  Google Scholar 

  • Seeb, L.W. 1998. Gene flow and introgression within and among three species of rockfishes, Sebastes auriculatus, S. caurinus, and S. maliger. J. Hered. 89: 393–404.

    Article  Google Scholar 

  • Seutin, G., B.N. White & P.T. Boag. 1991. Preservation of avian blood and tissue samples for DNA analysis. Can. J. Zool. 69: 82–90.

    CAS  Google Scholar 

  • Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457–462.

    CAS  Google Scholar 

  • Sokal, R.R. & J.F. Rohlf. 1995. Biometry, 3rd edition, W.H. Freeman, NY. 877 pp.

    Google Scholar 

  • Stanley, R.D., B.M. Leaman, L. Haldorson & V.M. O'Connell. 1994. Movements of tagged adult yellowtail rockfish, Sebastes flavidus, off the west coast of North America. Fish. Bull. 92: 655–662.

    Google Scholar 

  • Tokranov, A.M. & L.L. Davydov. 1997. Some aspects of biology of the shortraker rockfish Sebastes borealis (scorpaenidae) in the Pacific waters of Kamchatka and western part of the Bering Sea: 1. spatial and bathymetric distribution. J. Ichthyol. 37: 761–768.

    Google Scholar 

  • Weir, B.S. & C.C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38: 1358–1370.

    Google Scholar 

  • Wimberger, P., J. Burr, A. Gray, A. Lopez & P. Bentzen. 1999. Isolation and characterization of twelve microsatellite loci for rockfish (Sebastes). Mar. Biotechnol. 1: 311–315.

    Article  CAS  Google Scholar 

  • Winer, B.J. 1971. Statistical Principles and Experimental Design, 2nd edition, McGraw-Hill Inc., NY. 907 pp.

    Google Scholar 

  • Withler, R.E., T.D. Beacham, A.D. Schultze, L.J. Richards & K.M. Miller. 2001. Co-existing populations of Pacific ocean perch, Sebastes alutus, in Queen Charlotte Sound, British Columbia. Mar. Biol. 139: 1–12.

    Google Scholar 

  • Wright, S. 1978. Variability within and among natural populations, Vol. 4, The University of Chicago Press, Chicago, IL. 580 pp.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Anthony J. Gharrett.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Matala, A.P., Gray, A.K., Heifetz, J. et al. Population Structure of Alaskan Shortraker Rockfish, Sebastes borealis, Inferred from Microsatellite Variation. Environmental Biology of Fishes 69, 201–210 (2004). https://doi.org/10.1023/B:EBFI.0000022876.71349.be

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/B:EBFI.0000022876.71349.be

Navigation