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Distribution of two isoforms of NADP-dependent isocitrate dehydrogenase in soybean (Glycine max)

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Abstract

Two different cDNAs that encode NADP-specific isocitrate dehydrogenase (NADP-IDH) isozymes of soybean (Glycine max) were characterized. The nucleotide sequences of the coding regions of these cDNAs have 74% identity to each other and give predicted amino acid sequences that have 83% identity to each other. Using PCR techniques, their coding regions were subcloned into a protein overexpression vector, pQE32, to yield pIDH4 and pIDH1, respectively. Both IDH4 and IDH1 enzymes were expressed in Escherichia coli as catalytically active His6 tagged proteins, purified to homogeneity by affinity chromatography on nickel chelate resin and rabbit polyclonal antibodies to each were generated. Surprisingly, antiserum to IDH4 did not react with IDH1 protein and IDH1 antiserum reacted only very weakly with IDH4 protein. IDH4 antibody reacts with a protein of expected molecular weight in cotyledon, young leaf, young root, mature root and nodules but the reaction with mature leaf tissue was low compared to other tissues. Western blot results show that IDH1 was not expressed in young roots but a protein that reacts with the IDH1 antibody was highly expressed in leaves, showing that there was tissue-specific accumulation of NADP-IDH isozymes in soybean.

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References

  • Atkins, C.A. 1991. Ammonia assimilation and export of nitrogen from the legume nodule. In: M.J. Dilworth and A.R. Glenn <nt>(eds)</nt> Biology and Biochemistry of Nitrogen Fixation, Elsevier, Amsterdam, pp. 293–319 (1990).

    Google Scholar 

  • Bradford, M.M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72: 248–254.

    Google Scholar 

  • Brouquisse, R., Nishimura, M., Gaillard, J. and Douce, R. 1987. Characterization of a cytosolic aconitase in higher plant cells. Plant Physiol. 84: 1402–1407.

    Google Scholar 

  • Chen, R.D., Marechal, P.L., Vidal, J., Jaquot, J.P. and Gadal, P. 1988. Purification and comparative properties of the cytosolic isocitrate dehydrogenase from pea (Pisum sativum). Eur. J. Biochem. 175: 565–572.

    Google Scholar 

  • Chen, R.D., Bismuth, E., Champigny, M.L., Gadal, P. 1989. Chromatographic and immunological evidence that chloroplastic and cytosolic pea leaf NADP-isocitrate dehydrogenase are distinct isoenzymes. Planta 178: 157–163.

    Google Scholar 

  • Chen, R.D. and Gadal, P. 1990. Structure, functions and regulation of NAD and NADP dependent isocitrate dehydrogenases in higher plants and in other organisms. Plant Physiol. Biochem. 28: 411–427.

    Google Scholar 

  • Crawford, N.M. and Arst, H.N. Jr. 1993. The molecular genetics of nitrate assimilation in fungi and plants. Annu. Rev Genet. 27: 115–146.

    Google Scholar 

  • Curry, G.A. and Ting, T.P. 1976. Purification, properties and kinetic observation on the isozymes of NADP-isocitrate dehydrogenase. Arch Biochem Biophys 176: 501–509.

    Google Scholar 

  • Elias, B.A. and Givan, C.V. 1977. α-Ketoglutarate supply for amino acid synthesis in higher plant chloroplasts. Plant Physiol 59: 738–740.

    Google Scholar 

  • Farabaugh, P.J. 1978. Sequence of lacI gene. Nature 274: 765–769.

    Google Scholar 

  • Fieuw, S., Muller-Rober, B., Galvez, S. and Willmitzer, L. 1995. Cloning and expression analysis of the cytosolic NADP(C)-dependent isocitrate dehydrogenase from potato. Implications for nitrogen metabolism. Plant Physiol 107: 905–913.

    Google Scholar 

  • Galvez, S., Bismuth, E., Sarda, C. and Gadal, P. 1994. Purification and characterization of chloroplastic NADP-isocitrate dehydrogenase from mixotropic tobacco cells. Plant Physiol. 105: 593–600.

    Google Scholar 

  • Galvez, S. and Gadal, P. 1995. On the function of the NADPdependent isocitrate dehydrogen isoenzymes in living organisms. Plant Sci. 105: 1–14.

    Google Scholar 

  • Galvez, S., Hodges, M., Bismuth, E., Samson, I., Teller, S. and Gadal, P. 1995. Purification and characterization of a fully active recombinant tobacco cytosolic NADP-dependent isocitrate dehydrogenase in Escherichia coli: evidence for a role for the N-terminal region in enzyme activity. Arch. Biochem. Biophys. 323: 164–168.

    Google Scholar 

  • Galvez, S., Hodges, M., Decottignies, P., Bismuth, E., Lancien, M., Sangwan, R.S., Dubois, F., LeMarechal, P., Cretin, C. and Gadal, P. 1996. Identification of a tobacco cDNA encoding a cytosolic NADP-isocitrate dehydrogenase. Plant. Mol. Biol. 30: 307–320.

    Google Scholar 

  • Galvez, S., Roche, O., Bismuth, E., Brown, S., Gadal, P. and Hodges, M. 1998. Mitochondrial localization of a NADPdependent isocitrate dehydrogenase isoenzyme by using the green fluorescent protein as a marker. Proc Natl Acad Sci USA 95: 7813–7818.

    Google Scholar 

  • Harlow, E. and Lane, D. 1988. Antibodies: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

    Google Scholar 

  • Haselbeck, R.J., Colman, R.F. and McAlister-Henn, L. 1992. Isolation and sequence of a cDNA encoding porcine mitochondrial NADP-specific isocitrate dehydrogenase. Biochemistry 31: 6219–6223.

    Google Scholar 

  • Henikoff, S. 1984. Unidirectional digestion with exonuclease III creates targeted breakpoints, for DNA sequencing. Gene 28: 351–359.

    Google Scholar 

  • Henson, C.A., Duke, S.H. and Collins, M. 1986. Characterization of NADP-isocitrate dehydrogenase from the host plant cytosol of lucerne (Medicago sativa) root nodules. Physiol. Plant 67: 538–544.

    Google Scholar 

  • Hochuli, E., Dobeli, H. and Schacher, A. 1987. New metal chelate adsorbent selective for proteins and peptide containing neighbouring histidine residues. J. Chromatogr. 411: 177–184.

    Google Scholar 

  • Kiang, T. and Gorman, B. 1985.Inheritance of NADP-active isocitrate dehydrogenase isozymes in soybeans. J Hered. 76: 279–284.

    Google Scholar 

  • Lam, H.-M., Coschigano, K., Schultz, C., Melo-Oliveira, R. and Tjaden, G. 1995. Use of Arabidopsis mutants and genes to study amide amino acid biosynthesis. Plant Cell 7: 887–898.

    Google Scholar 

  • Lawlor, D.W., Kontturi, M. and Young, A.T. 1989. Photosynthesis by flag leaves of wheat in relation to protein, ribulose bisphosphatecarboxylase activity and nitrogen supply. J. Exp. Bot. 40: 43–52.

    Google Scholar 

  • McDermott, T.R. and Kahn, M.L. 1992. Cloning and mutagenesis of the Rhizobium meliloti isocitrate dehydrogenase gene. J. Bact. 174: 4790–4797.

    Google Scholar 

  • Miflin, B.J. and Lea, P.J. 1976. The pathway of nitrogen assimilation in plants. Phytochemistry 15: 873–885.

    Google Scholar 

  • Randall, D.D. and Givan, C.V. 1981. Subcellular localization of NADP-isocitrate dehydrogenase in Pisum sativum leaves. Plant Physiol. 68: 70–73.

    Google Scholar 

  • Rasmusson, A.G. and Moller, I.M. 1990. NADP-utilizing enzymes in the matrix of plant mitochondria. Plant Physiol 94: 1012–1018.

    Google Scholar 

  • Robertson, J.G. and Farnden, K.J.F. 1980. Ultrastructure and metabolism of the developing legume root nodule. In: P.K. Stumpf and E.E. Conn <nt>(eds.)</nt>, The Biochemistry of Plants, vol 5, Academic Press, New York, pp. 65–113.

    Google Scholar 

  • Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  • Schubert, K.R. 1986. Products of biological nitrogen fixation in higher plants: Synthesis, transport and metabolism. Annu. Rev. Plant Physiol. 37: 539–574.

    Google Scholar 

  • Sharrosh, B.S. and Dixon, R.A. 1992. Molecular characterization and expression of an isocitrate dehydrogenase from alfalfa. Plant Mol Biol 20: 801–807.

    Google Scholar 

  • Short, J.M., Fernandez, J.M., Sorge, J.A. and Huse, W.D. 1988. Lambda ZAP: a bacteriophage lambda expression vector with in vivo excision properties. Nucl. Acids Res. 16: 7583–7600 (1988).

    Google Scholar 

  • Somerville, J.E. and Kahn, M.L. 1983. Cloning of the glutamine synthetase I gene from Rhizobium meliloti. J. Bact. 156: 168–176.

    Google Scholar 

  • Udvardi, M.K., McDermott, T.R. and Kahn, M.L. 1993. Isolation and characterization of a cDNA encoding NADP-specific isocitrate dehydrogenase from soybean (Glycine max). Plant Mol. Biol. 21: 739–752.

    Google Scholar 

  • Vance, C.P., Gregerson, R.G., D.L., Miller, and Gantt, J.S. 1994. Primary assimilation of nitrogen in alfalfa nodules: molecular features of the enzymes involved. Plant Science 101: 51–64.

    Google Scholar 

  • Wych, R.D. and Rains, D.W. 1978. Simultaneous measurement of nitrogen fixation estimated by acetylene-ethylene assay and nitrate absorption by soybeans. Plant Physiol 62: 443–448.

    Google Scholar 

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Park, K.S., Kahn, M.L. Distribution of two isoforms of NADP-dependent isocitrate dehydrogenase in soybean (Glycine max). Plant Mol Biol 40, 13–21 (1999). https://doi.org/10.1023/A:1026464704134

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