Skip to main content
Log in

Diagnosis of N-acetylglutamate synthase deficiency by use of cultured fibroblasts and avoidance of nonsense-mediated mRNA decay

  • Published:
Journal of Inherited Metabolic Disease

Abstract

Molecular diagnosis of N-acetylglutamate synthase deficiency (NAGSD) has become possible now that the corresponding gene has been identified. We describe the genetic analysis of a patient with NAGSD using low-level transcripts derived from cultured fibroblasts. One defective allele (c.1306–1307insT) was detected by PCR amplification. However, the transcript from a second mutation (IVS3-2A>T), causing aberrant splicing with the generation of a premature termination codon, was not detected until interference of nonsense-mediated mRNA decay was abrogated by the translation inhibitor cycloheximide. We demonstrate that low-level transcripts in cells that do not express significant enzyme activity are a valuable tool for molecular studies of genetic alterations, and suggest routine abrogation of nonsense-mediated mRNA decay using cycloheximide when transcript analysis is performed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

REFERENCES

  • Bachmann C, Krahenbiihl S, Colombo JP, Schubiger G, Jaggi KH, Tonz O (1981) N-Acetylglutamate synthetase deficiency: a disorder of ammonia detoxification. N Engl J Med 304: 543.

    PubMed  CAS  Google Scholar 

  • Bateman JF, Freddi S, Lamande SR, et al (1999) Reliable and sensitive detection of premature termination mutations using a protein truncation test designed to overcome problems of nonsense-mediated mRNA instability. Hum Mutat 13: 311–317.

    Article  PubMed  CAS  Google Scholar 

  • Caldovic L, Morizono H, Gracia Panglao M, et al (2002) Cloning and expression of the human N-acetylglutamate synthase gene. Biochem Biophys Res Commun 299: 581–586.

    Article  PubMed  CAS  Google Scholar 

  • Colombo JP (1994) N-Acetylglutamate synthetase (NAGS) deficiency. Adv Exp Med Biol 368: 135–143.

    PubMed  CAS  Google Scholar 

  • Colombo JP (1995) N-Acetylglutamate deficiency: clinical and biochemical features. Int Pediatr 10: 109–113.

    Google Scholar 

  • Culbertson MR (1999) RNA surveillance. Unforeseen consequences for gene expression, inherited genetic disorders and cancer. Trends Genet 15: 74–80.

    Article  PubMed  CAS  Google Scholar 

  • Custodio N, Carmo-Fonseca M (2001) Quality control of gene expression in the nucleus. J Cell Mol Med 5: 267–275.

    PubMed  CAS  Google Scholar 

  • Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol 3: 195–205.

    Article  PubMed  CAS  Google Scholar 

  • Elpeleg O, Shaag A, Ben-Shalom E, Schmid T, Bachmann C (2002) N-Acetylglutamate synthase deficiency and the treatment of hyperammonemic encephalopathy. Ann Neurol 52: 845–849.

    Article  PubMed  CAS  Google Scholar 

  • Frischmeyer PA, Dietz HC (1999) Nonsense-mediated mRNA decay in health and disease. Hum Mol Genet 8: 1893–1900.

    Article  PubMed  CAS  Google Scholar 

  • Hdberle J, Koch HG (2003) Cultured fibroblasts as a tool for improvement of molecular analysis in ornithine transcarbamylase deficiency [Letter]. Hum Mutat 21: 649.

    Article  Google Scholar 

  • Hdberle J, Schmidt E, Pauli S, et al (2003) Mutation analysis in patients with human N-acetylglutamate synthase deficiency. Hum Mutat 21: 593–597.

    Article  Google Scholar 

  • Krawczak M, Reiss J, Cooper DN (1992) The mutational spectrum of single base-pair sub-stitutions in mRNA splice junctions of human genes: causes and consequences. Hum Genet 90: 41-54.

    Article  PubMed  CAS  Google Scholar 

  • Li B, Wachtel C, Miriami E, et al (2002) Stop codons affect 5' splice site selection by surveillance of splicing. Proc Natl Acad Sci USA 99: 5277-5282.

    Article  PubMed  CAS  Google Scholar 

  • Nakai K, Sakamoto H (1994) Construction of a novel database containing aberrant splicing mutations of mammalian genes. Gene 141: 171–177.

    Article  PubMed  CAS  Google Scholar 

  • Noensie EN, Dietz HC (2001) A strategy for disease gene identification through nonsense-mediated mRNA decay inhibition. Nature Biotechnology 19: 434–439.

    Article  PubMed  CAS  Google Scholar 

  • Nomura S, Sugano K, Kashiwabara H, et al (2000) Enhanced detection of deleterious and other germline mutations of hMSH2 and hMLH1 in Japanese hereditary nonpolyposis colorectal cancer kindreds. Biochem Biophys Res Commun 271: 120-129.

    Article  PubMed  CAS  Google Scholar 

  • Rajavel KS, Neufeld EF (2001) Nonsense-mediated decay of human HEXA mRNA. Mol Cell Biol 21: 5512–5519.

    Article  PubMed  CAS  Google Scholar 

  • Rapp B, Hdberle J, Linnebank M, et al (2001) Genetic analysis of carbamoylphosphate synthetase I and ornithine transcarbamylase deficiency using fibroblasts. Eur J Pediatr 160: 283–287.

    Article  PubMed  CAS  Google Scholar 

  • Schell T, Kulozik AE, Hentze MW (2002) Integration of splicing, transport and translation to achieve mRNA quality control by the nonsense-mediated decay pathway. Genome Biol 3:1006.1–1006.6.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Häberle, J., Denecke, J., Schmidt, E. et al. Diagnosis of N-acetylglutamate synthase deficiency by use of cultured fibroblasts and avoidance of nonsense-mediated mRNA decay. J Inherit Metab Dis 26, 601–605 (2003). https://doi.org/10.1023/A:1025912417548

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1025912417548

Keywords

Navigation