Abstract
The taxonomic position of a soil isolate, strain E626, was evaluated using the polyphasic approach. The organism was found to have chemical and morphological features consistent with its assignment to the genus Nonomuraea, a member of the family Streptosporangiaceae. Strain E626 consistently formed a distinct phyletic line within the Streptosporangiaceae 16S rDNA tree using four different algorithms. Furthermore, the taxonomic distinctness of the organism is underpinned by a range of phenotypic properties, notably morphological features. It is, therefore, proposed that the organism be classified in the genus Nonomuraea as Nonomuraea terrinata sp. nov.
Similar content being viewed by others
References
Athalye M., Goodfellow M., Lacey J. and White R.P. 1985. Numerical classification of Actinomadura and Nocardiopsis. Int. J. Syst. Bacteriol. 35: 86–98.
Chiba S., Suzuki M. and Ando K. 1999. Taxonomic re-evaluation of ‘Nocardiopsis’ sp. K-252T (= NRRL 15532T): a proposal to transfer this strain to the genus Nonomuraea as Nonomuraea longicatena sp. nov. Int. J. Syst. Bacteriol. 49: 1623–1630.
Chun J. and Goodfellow M. 1995. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45: 240–245.
Collins M.D., Shah H.N. and Minnikin D.E. 1980. A note on the separation of natural mixtures of bacterial menaquinones using reverse-phase thin-layer chromatography. J. Appl. Bacteriol. 48: 277–282.
Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368–376.
Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
Felsenstein J., University of Washington, Department of Genetics, Seattle, USA 1993. PHYLIP (phylogenetic inference package), version 3.5c.
Fischer A., Kroppenstedt R.M. and Stackebrandt E. 1983. Molecular-genetic and chemotaxonomic studies on Actinomadura and Nocardiopsis. J. Gen. Microbiol. 129: 3433–3446.
Fitch W.M. and Margoliash E. 1967. Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome C sequences is one of general applicability. Science 155: 279–284.
Goodfellow M., Stanton L.J., Simpson K.E. and Minnikin D.E. 1990. Numerical and chemical classification of Actinoplanes and related actinomycetes. J. Gen. Microbiol. 136: 19–36.
Holt J.G., Krieg N.R., Sneath P.H.A., Staley J.T. and Williams S.T. 1994. Bergey's Manual of Determinative Bacteriology. 9th edn. Williams & Wilkins, Baltimore.
Jones K.L. 1949. Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J. Bacteriol. 57: 141–145.
Jukes T.H. and Cantor C.R. 1969. Evolution of protein molecules. In: Munro H.N. (ed.), Mammalian Protein Metabolism Vol. 3. Academic Press, New York, pp. 21–123.
Kawato M. and Shinobu R. 1959. On Streptomyces herbaricolor nov. sp.,supplement: a simple technique for microscopical observation. Mem. Osaka Univ. Lib. Arts Educ. B. Nat. Sci. 8: 114–119.
Kim S.B., Brown R., Oldfield C., Gilbert S.C., Iliarionov S. and Goodfellow M. 2000. Gordonia amicalis, sp. nov., a new diof benzothiophene-desulphurizing actinomycete. Int. J. Syst. Evol. Microbiol. 50: 2031–2036.
Kluge A.G. and Farris F.S. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18: 1–32.
Kroppenstedt R.M., Stackebrandt E. and Goodfellow M. 1990. Taxonomic revision of the actinomycete genera Actinomadura and Microtetraspora. System. Appl. Microbiol. 13: 148–160.
Küster E. 1959. Outline of a comparative study of criteria used in characterisation of the actinomycetes. Int. Bull. Bacteriol. Nomencl. Taxon 9: 97–104.
Lechevalier H.A. and Lechevalier M.P. 1970. A critical evaluation of the genera of aerobic actinomycetes. In: Prauser H. (ed.), The Actinomycetales. VEB Gustav Fischer, Jena, pp. 393–405.
Lechevalier M.P., De Biévre C. and Lechevalier H.A. 1977. Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem. Syst. Ecol. 5: 249–260.
Meyer J. 1989. Genus Actinomadura, Lechevalier and Lechevalier (1970a), 400AL. In: Williams S.T., Sharpe M.E. and Holt J.G. (eds), Bergey's Manual of Systematic Bacteriology Vol. 4. Williams & Wilkins, Baltimore, pp. 2511–2526.
Minnikin D.E., O'Donnell A.G., Goodfellow M., Alderson G., Athalye M., Schaal A. et al. 1984. An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J. Mimaximum crobiol. Methods 2: 233–241.
Nonomura H. and Ohara Y. 1971. Distribution of actinomycetes in soil. XI. Some new species of the genus Actinomadura Lechevalier et al. J. Ferment. Technol. 49: 904–912.
Poschner J., Kroppenstedt R.M., Fischer A. and Stackebrandt E. 1985. DNA:DNA reassociation and chemotaxonomic studies on Actinomadura, Microbispora, Microtetraspora, Micropolyspora and Nocardiopsis. System. Appl. Microbiol. 6: 264–270.
Saitou N. and Nei M. 1987. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4: 406–425.
Schaal K.P. 1985. Laboratory diagnosis of actinomycete diseases. In: Goodfellow M. and Minnikin D.E. (eds), Chemical Methods in Bacterial Systematics. Academic Press, London, pp. 359–381.
Sneath P.H.A. (ed.) 1992. International Code of Nomenclature of Bacteria, 1990 Revision. American Society for Microbiology, Washington, D.C.
Stackebrandt E., Rainey F.A. and Ward-Rainey N.L. 1997. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. Syst. Bacteriol. 47: 479–491.
Stackebrandt E., Wink J., Steiner U. and Kroppenstedt R.M. 2001. Nonomuraea dietzii sp. nov. Int. J. Syst. Evol. Microbiol. 51: 1437–1441.
Staneck J.L. and Roberts G.D. 1974. Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl. Microbiol. 28: 226–231.
Tamura T., Suzuki S.-I. and Hatano K. 2000. Acrocarpospora gen. nov., a new genus of the order Actinomycetales. Int. J. Syst. Bacteriol. 50: 1163–1171.
Wang Y., Zhang Z., Ruan J., Wang Y. and Ali S. 1999. Investigation of actinomycete diversity in the tropical rainforests of Singapore. J. Ind. Microbiol. Biotech. 23: 178–187.
Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevski M.I. et al. 1987. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463–464.
Williams S.T., Goodfellow M., Alderson G., Wellington E.M.H., Sneath P.H.A. and Sackin M.J. 1983. Numerical classification of Streptomyces and related genera. J. Gen. Microbiol. 129: 1743–1813.
Zhang Z.S., Wang Y. and Ruan J.S. 1998. Reclassification of Thermomonospora and Microtetraspora. Int. J. Syst. Bacteriol. 48: 411–422.
Zhou Z.H., Liu Z.-H., Qian Y.-D., Kim S.B. and Goodfellow M. 1998. Saccharopolyspora spinosporotrichia sp. nov., a novel actinomycete from soil. Int. J. Syst. Bacteriol. 48: 53–58.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Quintana, E., Maldonado, L. & Goodfellow, M. Nonomuraea terrinata sp. nov., a novel soil actinomycete. Antonie Van Leeuwenhoek 84, 1–6 (2003). https://doi.org/10.1023/A:1024474719786
Issue Date:
DOI: https://doi.org/10.1023/A:1024474719786