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Evolution by Gene Duplication Revisited: Differentiation of Regulatory Elements Versus Proteins

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Abstract

For evolution by gene duplication, differentiation of both regulatory elements and proteins is important. Particularly the former is thought to have large effects on morphological evolution, since differential expression of genes is essential for development. In this report, recent knowledge on regulatory elements is reviewed that is relevant to the population genetics aspects of gene duplication. Regulatory elements usually consist of multiple binding sites of two or more transcription factors. The amount of gene product is quantitatively regulated, and is thought to be subject to stabilizing selection. The intensity of stabilizing selection depends upon the level of constraint imposed by regulatory networks. Gene duplication has significant effects on stabilizing selection via perturbation of gene expression. It is pointed out that constraints coming from regulatory networks are most important for survival of duplicate genes, and that both drift and selection are at work in the process of acquisition of new gene expression and function.

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References

  • Amores, A., A. Force, T.-L. Yan, L. Joly, C. Amemiya, A. Fritz, R.K. Ho, J. Langeland, V. Prince, Y.-L. Wang, M. Westerfield, M. Ekker & J.H. Postlethwait, 1998. Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.

    PubMed  Google Scholar 

  • Aparicio, S., K. Hawker, A. Cottage, Y. Mikawa, L. Zuo, B. Venkatesh, E. Chen, R. Kumlauf & S. Brenner, 1997. Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nat. Gene. 16: 79-83.

    Google Scholar 

  • Carroll, S.B., J.K. Grenier & S.D. Weatherbee, 2001. From DNA to Diversity. Blackwell Science, Malden, MA.

    Google Scholar 

  • Clark, A., 1994. Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA, 91: 2950-2954.

    PubMed  Google Scholar 

  • Courseaux, A. & J.-L. Nahon, 2001. Birth of two chimera genes in the hominidae lineage. Science 291: 1293-1297.

    PubMed  Google Scholar 

  • Creighton, T.E. & N.J. Darby, 1989. Functional evolutionary divergence of proteolytic enzymes and their inhibitors. Trends Bioch. Sci. 14: 319-324.

    Google Scholar 

  • Davidson, E.H., 2001. Genomic Regulatory Systems. Academic Press, San Diego, CA.

    Google Scholar 

  • Gerhart, J. & M. Kirschner, 1997. Cells, Embryos, and Evolution. Blackwell Science, Malden, MA.

    Google Scholar 

  • Hedrick, P.W., 2000. Genetics of Populations. Jones and Bartlett, Sudbury, MA 2nd edn.

    Google Scholar 

  • Hood, L., J.H. Campbell & S.C.R. Elgin, 1975. The organization, expression and evolution of antibodies and other multigene families. Annu. Rev. Genet. 9: 305-353.

    PubMed  Google Scholar 

  • Hughes, A., 1999. Adaptive Evolution of Genes and Genomes. Oxford University Press, Oxford, UK.

    Google Scholar 

  • Ingram, V.M., 1963. The Hemoglobins in Genetics and Evolution. Columbia University Press, Columbia, USA.

    Google Scholar 

  • International Human Genome Sequencing Consortium, 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.

    Google Scholar 

  • Jacob, F., 1977. Evolution and tinkering. Science 196: 1161-1166.

    PubMed  Google Scholar 

  • Jeong, H., S.P. Mason, A.-L. Barabasi & Z.N. Oltvai, 2001. Lethality and centrality in protein networks. Nature 411: 41-42.

    PubMed  Google Scholar 

  • Kimura, M. & T. Ohta, 1969. The average number of generations until fixation of a mutant gene in a finite population. Genetics 61: 763-771.

    Google Scholar 

  • Li, W.-H., 1997. Molecular Evolution. Sinauer Associates, Sunderland, USA.

    Google Scholar 

  • Long, M., W. Wang & J. Zhang, 1999. Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Gene 238: 135-141.

    PubMed  Google Scholar 

  • Ludwig, M.Z., C. Bergman, N.H. Patel & M. Kreitman, 2000. Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403: 564-567.

    PubMed  Google Scholar 

  • Lynch, M. & J.S. Conery, 2000. The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.

    Article  PubMed  Google Scholar 

  • Lynch, M. & A. Force, 2000. The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.

    PubMed  Google Scholar 

  • Mackay, T.F.C., 1995. The genetic basis of quantitative variation: numbers of sensory bristles of Drosophila melanogaster as a model system. Trends Genet. 11: 464-470.

    PubMed  Google Scholar 

  • Mackay, T.F.C. & C.H. Langley, 1990. Molecular and phenotypic variation in the achaete-scute region of Drosophila melanogaster. Nature 348: 64-66.

    PubMed  Google Scholar 

  • Ohta, T., 1972. Population size and rate of evolution. J. Mol. Evol. 1: 305-314.

    PubMed  Google Scholar 

  • Ohta, T., 1980. Evolution and variation of multigene families. Lecture Notes in Biomathematics, Springer, Berlin, vol. 37.

    Google Scholar 

  • Ohta, T., 1987. Simulating evolution by gene duplication. Genetics 115: 207-213.

    Google Scholar 

  • Ohta, T., 1988. Further simulation studies on evolution by gene duplication. Evolution 42: 375-386.

    Google Scholar 

  • Ohta, T., 1994. On hypervariability at the reactive centre of proteolytic enzymes and their inhibitors. J. Mol. Evol. 39: 614-619.

    PubMed  Google Scholar 

  • Ohta, T. & H. Tachida, 1990. Theoretical study of near neutrality. I. Heterozygosity and rate of mutant substitution. Genetics 126: 219-229.

    PubMed  Google Scholar 

  • Piatigorsky, J., 1984. Lens crystallins and their gene families. Cell 38: 620-621.

    PubMed  Google Scholar 

  • Rosa, R.d., R.R. Grenier, T. Andreeva, C.E. Cook, A. Adoutte, M. Akam, S.B. Carroll & G. Balavoine, 1999. Hox genes in brachiopods and priapulids and protostome evolution. Nature 399: 772-776.

    PubMed  Google Scholar 

  • Rouquier, S., S. Taviaux, B.J. Trask, V. Brand-Arpon, G.v.d. Engh, J. Demaille & D. Giorgi, 1998. Distribution of olfactory receptor genes in the human genome. Nat. Genet. 18: 243-250.

    PubMed  Google Scholar 

  • Shubin, N., C. Tabin & S.B. Carroll, 1997. Fossils, genes and the evolution of animal limbs. Nature 388: 639-648.

    PubMed  Google Scholar 

  • Smith, N.G.C., R. Knight & L.D. Hurst, 1999. Vertebrate genome evolution: a slow shuffle or a big bang? BioEssays 21: 697-703.

    PubMed  Google Scholar 

  • Ventor, J.C. et al., 2001. The human genome. Science 291: 1304-1351.

    Google Scholar 

  • Wagner, A., 1999. Redundant gene functions and natural selection. J. Evol. Biol. 12: 1-16.

    Google Scholar 

  • Walsh, J.B., 1995. How often do duplicated genes evolve new functions? Genetics 139: 421-428.

    PubMed  Google Scholar 

  • White, R.J., 2001. Gene Transcription. Blackwell Science, Malden, MA.

    Google Scholar 

  • Williams, J.A., S.W. Paddock, K. Vorwerk & S.B. Carroll, 1994. Organization of wing formation and induction of a wing-patterning gene at the dorsal/ventral compartment boundary. Nature 368: 299-305.

    PubMed  Google Scholar 

  • Zuckerkandl, E., 1994. Molecular pathways to parallel evolution. I. Gene Nexuses and their morphological correlates. J. Mol. Evol. 39: 661-678.

    PubMed  Google Scholar 

  • Zuckerkandl, E., 2001. Intrinsically driven changes in gene interaction complexity. I. The spontaneous growth of regulatory complexes. J. Mol. Evol. 53: 539-554.

    PubMed  Google Scholar 

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Ohta, T. Evolution by Gene Duplication Revisited: Differentiation of Regulatory Elements Versus Proteins. Genetica 118, 209–216 (2003). https://doi.org/10.1023/A:1024130431575

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